Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacaccgactgctgcttcttgttcttattatcgtggcacggcgccacggcggtcatctgtcattgtctttgtcttctaccctacccacccctcgaaagaaaacaaacaaagaaagcacgactcatgatccgttcttctgatttgatttgatttgtttttttttgtgtgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G135283_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 1
CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacaccgactgctgcttcttgttcttattatcgtggcacggcgccacggcggtcatctgtcattgtctttgtcttctaccctacccacccctcgaaagaaaacaaacaaagaaagcacgactcatgatccgttcttctgatttgatttgatttgtttttttttgtgtgcgcgcag
|  | ||||||||||||||||||||||||| ||||||||||||||| || |||| || |||||||||||||||||||||||||| ||||||||||||||||| |  | |    | || | | || |  |||                           || | |  |||| | | || | | ||||        || || | |                   |   | | ||||||||    |||| | || | || ||    | | |           
CCGCTCGCCCACCATGGCCATGGCGACGGCGCTCCGCAAGCTCTCCTCCGACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctcttcttcctccattttttcttta---------------------------atttttttttgtttatatcgt-tgccct--------cttgagaaa------------------tggtgcttaatccgttccatggattggtttgggttcgtgcgctctcgcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286152|gb|FL173733.1|FL173733
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286141|gb|FL173722.1|FL173722
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379736|gb|FL173736.1|FL173736
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379741|gb|FL173741.1|FL173741
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|67019160|gb|CO447909.1|CO447909
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|21987802|gb|BQ779330.1|BQ779330
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211284346|gb|FL173719.1|FL173719
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149078907|gb|EE167727.2|EE167727
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211382375|gb|FL173752.1|FL173752
EST:     ACGCTCTGSGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCMTTCMGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379738|gb|FL173738.1|FL173738
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379739|gb|FL173739.1|FL173739
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286153|gb|FL173734.1|FL173734
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379748|gb|FL173748.1|FL173748
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286143|gb|FL173724.1|FL173724
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379742|gb|FL173742.1|FL173742
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|89761747|gb|DY689638.1|DY689638
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAAAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379749|gb|FL173749.1|FL173749
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286154|gb|FL173735.1|FL173735
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379740|gb|FL173740.1|FL173740
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCTCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379747|gb|FL173747.1|FL173747
EST:     ACGCTCTGSSCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379745|gb|FL173745.1|FL173745
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379746|gb|FL173746.1|FL173746
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379743|gb|FL173743.1|FL173743
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286151|gb|FL173732.1|FL173732
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211284347|gb|FL173720.1|FL173720
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286145|gb|FL173726.1|FL173726
EST:     ACGCTCTGSSCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211382374|gb|FL173751.1|FL173751
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379744|gb|FL173744.1|FL173744
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379750|gb|FL173750.1|FL173750
EST:     ACGCTCTG-SCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379737|gb|FL173737.1|FL173737
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286140|gb|FL173721.1|FL173721
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC