1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGAGGGCCCCCGGAGAGTGCGCAAGCCCTACACCATCACCAAGTCGCGCGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCACTGCAGCTgtgagtcgacccactctctccctccctccctccctcccccatctcctccggcggcggcggcttacctctgctttgtctcactaatggtatgttcaaagtt...
species | Zea mays |
transcript | GRMZM2G135052_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCACTGCAGCT CTTTGACCGTGACTGGAAAAAGATTGAAGCATATGTNTGGCTCCAAGACAGEST: gi|5847380|gb|AW000459.1|AW000459
genomic: GCACTGCAGCTgtgagtcgac ... cgtgtaacagCTTTGACCGTGACTGGAAAAAGATTGAAGCATATGT-TGGCTCCAAGACAG
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCACTGCAGCT CTTTGACCGTGACTGGAAAAAGATTGAAGCATATGTTGGCTCCAAGACAGT
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCACTGCAGCTgtgagtcgac ... cgtgtaacagCTTTGACCGTGACTGGAAAAAGATTGAAGCATATGTTGGCTCCAAGACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGGCCCCCGGAGAGTGCGCAAGCCCTACACCATCACCAAGTCGCGCGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCACTGCAGCTgtgagtcgacccactctctccctccctccctccctcccccatctcctccggcggcggcggcttacctctgctttgtctcactaatggtatgttcaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccggc