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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCGCTTGTCCCTCCCGTTCCAAGGAGCACGTGCTTCTCGCCGCGCCGTTCGCCCGCCGCCGCCGCCACCGGTTCATCGCCAGCTATGTCTTCTCAGgtaccgccctcacctcctcggttccgccggtcgattagggttcgagtcagtgtagtcgcccatcagtcgcgctggaagcttgttagctttgttatttgagctccccactctgtgttcgtcgacccccctctggatcccgcctatccggcgtggtctcacgaattagtatgtgggttcacag

Basic information

species Zea mays
transcript GRMZM2G134770_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89756650|gb|DY686607.1|DY686607
EST:     GTTCGCCCGCCGCCGCCGCCTCCGGTTCATCGCCAGCTATGTCTTCTCAG                         GTCGACAGCCGCAGCCA
genomic: GTTCGCCCGCCGCCGCCGCCACCGGTTCATCGCCAGCTATGTCTTCTCAGgtaccgccct ... gggttcacagGTCGACAGCCGCAGCCA
EST: gi|211157322|gb|FK993534.1|FK993534
EST:     AGCTATGTCTTCTCAG                         GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG
genomic: AGCTATGTCTTCTCAGgtaccgccct ... gggttcacagGTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG
EST: gi|94480167|gb|EB709125.1|EB709125
EST:     CCGCCGCCGCCACCGGTTCATCGCCAGCTATGTCTTCTCAG                         GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG
genomic: CCGCCGCCGCCACCGGTTCATCGCCAGCTATGTCTTCTCAGgtaccgccct ... gggttcacagGTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG