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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCCTGCCCACGCTCACGGACGACCTCATCGAACTCATGATGCAGCCGCCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcgccccccccatcccctttgcaaacgacgacggggggcaatttgctttcccccaatctgaatcggaacgtgactcgtcaggcgagcgtagcg...

Basic information

species Zea mays
transcript GRMZM2G134747_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134747_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g33270.1 (Oryza sativa), 5'ss of exon 1
CGGCCCTGCCCACGCTCACGGACGACCTCATCGAACTCATGATGCAGCCGCCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgc--gcggcgccccccccatcccct--ttgcaaacgacgacggggggcaatttgctttcccccaatctgaatcggaacgtgactcgtc-aggcgagcgtagcg
||||| ||||   |||||| ||||||||| |||  ||||||||| ||||||| ||||| |||||||||||  |||||||||||||||||||||| |||||||||   |  |  |||| || |||| |    | |    ||   |     |||||   | || ||   ||||| ||  |||   ||  ||  | ||   | |    
CGGCCGTGCCGGGGCTCACCGACGACCTCGTCGCGCTCATGATGGAGCCGCCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctccttcccctccctcccatggccgtaccgtactctgcttctcaattgagtctcgcc---tctgattccaaaccatacatgttgatgctttccttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211047254|gb|FL125328.1|FL125328
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAAGAGAGC
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGA-GAGAGC
EST: gi|211044290|gb|FL125313.1|FL125313
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|211044299|gb|FL125322.1|FL125322
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|211044292|gb|FL125315.1|FL125315
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|78113115|gb|DV531509.1|DV531509
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|211047249|gb|FL125323.1|FL125323
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|211047250|gb|FL125324.1|FL125324
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
EST: gi|211044297|gb|FL125320.1|FL125320
EST:     CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAG                         ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA
genomic: CCCTTCCGGTCCTACCACCCCAACATCGTCCACGAGCCCGCCATTTACAGgtgcgcggcg ... ttgctcacagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATCATCAA