1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTGCCGGGGGCCCCGCGGTGCCCGCCTCCTCTGCTGCCCGCGCCGCGCCGCTCTCCTCGGCGGCCGCCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAGgtaaggatctcatatccccagatctcgattacctggcggcgtacagcgctgattgagtagcggtggccgcgtgggtgtgctgcag
species | Zea mays |
transcript | GRMZM2G134738_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCTCCTCGGCGGCCGTCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAG AGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|37382992|gb|CF628470.1|CF628470
genomic: GCTCTCCTCGGCGGCCGCCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAGgtaaggatct ... tgtgctgcagAGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: GCGGCCGCCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAG AGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|18649503|gb|BM498322.1|BM498322
genomic: GCGGCCGCCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAGgtaaggatct ... tgtgctgcagAGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: TCCGCCGCACTAGCCCTCTCCTCTCAG AGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|18450555|gb|BM428833.1|BM428833
genomic: TCCGCCGCACTAGCCCTCTCCTCTCAGgtaaggatct ... tgtgctgcagAGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: TAGCCCTCTCCTCTCAG AGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|31354094|gb|CD438451.1|CD438451
genomic: TAGCCCTCTCCTCTCAGgtaaggatct ... tgtgctgcagAGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: ACTAGCCCTCTCCTCTCAG AGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
genomic: ACTAGCCCTCTCCTCTCAGgtaaggatct ... tgtgctgcagAGGACAAGCCGGCGAGGGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCGGGGGCCCCGCGGTGCCCGCCTCCTCTGCTGCCCGCGCCGCGCCGCTCTCCTCGGCGGCCGCCGGCTTCCGCCGCACTAGCCCTCTCCTCTCAGgtaaggatctcatatccccagatctcgattacctggcggcgtacagcgctgattgagtagcggtggccgcgtgggtgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC