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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGACGGCGCCAACATCTCCCACCTCACCGGCACCATCGCCGGGCCCGCCGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacccgccgttccttcctctcccctgattcctccgctccagcgccttccatcgaatcccctctctgtcctttgtttgccctacccggctaccct...

Basic information

species Zea mays
transcript GRMZM2G134176_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134176_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g70140.1 (Oryza sativa), 5'ss of exon 1
CACGACGGCGCCAACATCTCCCACCTCACCGGCACCATCGCCGGGCCCGCCGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacccgc-cgttccttcctctcccctgattcctccgctccagcgccttccatcgaatcccctctctgtcctttgtttgccctacccggctaccct
||||||||| ||| ||||||||||||||||||||||||||||||||||   | ||  ||||||||||||||||| ||||||||||| |||||||| || |||    || || | |    ||||||| || | |    |      |   ||       | |     |  | |  ||   | |||||||    ||  |  || 
CACGACGGCTCCACCATCTCCCACCTCACCGGCACCATCGCCGGGCCCCAAGGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCAGgtactcaatccccacccctcttcctcgccgccgccggcggattccttccgttcgtgtttgggcggcggcgcgatcggct-tttgcccccgtcgcatctccg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229682|gb|CF919995.1|CF919995
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011836|gb|FL066262.1|FL066262
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|19822046|gb|BQ048070.1|BQ048070
EST:     CTTCTGTCCCTACTAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71305841|gb|DR789046.1|DR789046
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76288098|gb|DV027666.1|DV027666
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78078206|gb|DV506621.1|DV506621
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|5929011|gb|AW056303.1|AW056303
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148935183|gb|EC879220.2|EC879220
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|31348575|gb|CD432932.1|CD432932
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|18659337|gb|BM500284.1|BM500284
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011839|gb|FL066265.1|FL066265
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|74243460|gb|DT651374.1|DT651374
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183787|gb|FL226959.1|FL226959
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|92088246|gb|EB484477.1|EB484477
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGTCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181392|gb|FL226953.1|FL226953
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183786|gb|FL226958.1|FL226958
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCASCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181395|gb|FL226956.1|FL226956
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|31909696|gb|CD651049.1|CD651049
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183797|gb|FL226969.1|FL226969
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCCTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71596377|gb|DR907128.1|DR907128
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183791|gb|FL226963.1|FL226963
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211181394|gb|FL226955.1|FL226955
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148957852|gb|EC904003.2|EC904003
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCC-GAAGATGCAGTTCATCACCAAAGTATG
EST: gi|19822034|gb|BQ048058.1|BQ048058
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78104812|gb|DV523230.1|DV523230
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76917766|gb|DV166996.1|DV166996
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|15499307|gb|BI595820.1|BI595820
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71333059|gb|DR803564.1|DR803564
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|148950957|gb|EC896595.2|EC896595
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|60338191|gb|DN205164.1|DN205164
EST:     AGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: AGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|76917765|gb|DV166995.1|DV166995
EST:     GTTCGTCATCGATATCCGCCTGCCCG                         GGGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: GTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|50336276|gb|CO531402.1|CO531402
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211183796|gb|FL226968.1|FL226968
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGARCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|60394349|gb|DN227219.1|DN227219
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|29576715|gb|CB616827.1|CB616827
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GNGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|71761684|gb|DR959621.1|DR959621
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011837|gb|FL066263.1|FL066263
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|67021220|gb|CO449969.1|CO449969
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|211011838|gb|FL066264.1|FL066264
EST:     CGACAGCNCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
EST: gi|78104811|gb|DV523229.1|DV523229
EST:     CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCG                         GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG
genomic: CGACAGCCCCTACGAGGGCGGCACGTTCGTCATCGATATCCGCCTGCCCGgtgagaaacc ... tggttggcagGTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG