1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGGCTCGTTCTGGTGTGGGTGGGCACCATGGCGGCCACAGAGGCCTCGGCAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttgattcaattgatcgcgctttctatcgctctgtgtgagtgccgtccacgtgacttttttttctgtgcgcgaatcgttctgatggtggtgcacgcgtgcag
species | Zea mays |
transcript | GRMZM2G134045_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACACCAAG ATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|89759291|gb|DY688160.1|DY688160
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAG ATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|6637089|gb|AW261361.1|AW261361
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAG ATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|32926997|gb|CF031809.1|CF031809
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAG ATGTGCTTCGATTGTACCGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|31358549|gb|CD442906.1|CD442906
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAG ATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTACEST: gi|32925344|gb|CF030156.1|CF030156
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
EST: CAGACAAGAGCGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAG ATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
genomic: CAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttga ... acgcgtgcagATGTGCTTCGATTGTAACGCCAAGAACCCGACGTGGGCGTCCGTCACCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGCTCGTTCTGGTGTGGGTGGGCACCATGGCGGCCACAGAGGCCTCGGCAGACAAGAACGCCGTCTTCCGCAAGCTTCGCACCAAATCAGACAACAAGgtactgttgattcaattgatcgcgctttctatcgctctgtgtgagtgccgtccacgtgacttttttttctgtgcgcgaatcgttctgatggtggtgcacgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT