1 5' 3' | 2 5' 3' | 3 5' 3' |
ATCTGCAGGGCCTCCGCGGCGGCCGGGGAGGAGACGACGCCGCCGCCGCCGCCGGCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgacgacaagacccccccccccccccccccctacttctccctctagctctcgcgcgcgcggccatgcatgcatgatgaaactggctgagctttgcag
species | Zea mays |
transcript | GRMZM2G133844_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGA TGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCAEST: gi|37378226|gb|CF625789.1|CF625789
genomic: GCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgac ... agctttgcagTGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCA
EST: GCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGA TGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCAEST: gi|4646657|gb|AI491495.2|AI491495
genomic: GCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgac ... agctttgcagTGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCA
EST: GCCGGCGGCCGCTCCCAAGAAGATCCTCAAGAANAAGCCCGTCTACTCGA TGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGANAAGTACCTGAACAGCAEST: gi|40334773|gb|CK368843.1|CK368843
genomic: GCCGGCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgac ... agctttgcagTGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCA
EST: CCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGA TGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCA
genomic: CCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgac ... agctttgcagTGAAGAAAGGGCAGATTGTGCGCGTGGACAAGGAGAAGTACCTGAACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCAGGGCCTCCGCGGCGGCCGGGGAGGAGACGACGCCGCCGCCGCCGCCGGCGGCCGCTCCCAAGAAGATCCTCAAGAAGAAGCCCGTCTACTCGAgtaagacgacgacaagacccccccccccccccccccctacttctccctctagctctcgcgcgcgcggccatgcatgcatgatgaaactggctgagctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC