1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATAGTAGCGGCGAGAACTTCCTCAAGGGCGTAAAGTGGTCGCCCGACGGGTCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcgcgcttacatttttctgatacgctctctcttgcgcccgcggcgagtggctaaaactaggggcattcccttcttccgttcgacag
species | Zea mays |
transcript | GRMZM2G133749_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|78120250|gb|DV538634.1|DV538634
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|211122217|gb|FL355462.1|FL355462
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|71437477|gb|DR818527.1|DR818527
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|71449230|gb|DR830280.1|DR830280
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|31558468|gb|CD527680.1|CD527680
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|76287082|gb|DV026650.1|DV026650
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|86475107|gb|DY241477.1|DY241477
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGAAGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAAEST: gi|60394554|gb|DN227424.1|DN227424
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|211186698|gb|FL366147.1|FL366147
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCC-GTTGCCGAGGC-GCTGTCGAEST: gi|211132517|gb|FL346748.1|FL346748
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGEST: gi|78084101|gb|DV512494.1|DV512494
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGA-GGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCG
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|94478312|gb|EB707270.1|EB707270
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAEST: gi|211083828|gb|FL344180.1|FL344180
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAGEST: gi|78112774|gb|DV531168.1|DV531168
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTC-G
EST: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTAGCGGCGAGAACTTCCTCAAGGGCGTAAAGTGGTCGCCCGACGGGTCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcgcgcttacatttttctgatacgctctctcttgcgcccgcggcgagtggctaaaactaggggcattcccttcttccgttcgacag
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