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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTAGCGGCGAGAACTTCCTCAAGGGCGTAAAGTGGTCGCCCGACGGGTCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcgcgcttacatttttctgatacgctctctcttgcgcccgcggcgagtggctaaaactaggggcattcccttcttccgttcgacag

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37420996|gb|CF648194.1|CF648194
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|78120250|gb|DV538634.1|DV538634
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|211122217|gb|FL355462.1|FL355462
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|71437477|gb|DR818527.1|DR818527
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|71449230|gb|DR830280.1|DR830280
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|31558468|gb|CD527680.1|CD527680
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|76287082|gb|DV026650.1|DV026650
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|86475107|gb|DY241477.1|DY241477
EST:     TCCTCCTTCCTCACCAGCTCCGAAGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|60394554|gb|DN227424.1|DN227424
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|211186698|gb|FL366147.1|FL366147
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCC-GTTGCCGAGGC-GCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|211132517|gb|FL346748.1|FL346748
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCG
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGA-GGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCG
EST: gi|78084101|gb|DV512494.1|DV512494
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|94478312|gb|EB707270.1|EB707270
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
EST: gi|211083828|gb|FL344180.1|FL344180
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAG
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTC-G
EST: gi|78112774|gb|DV531168.1|DV531168
EST:     TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTT                         ACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA
genomic: TCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcg ... cgttcgacagACCGGAGGAAGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGTAGCGGCGAGAACTTCCTCAAGGGCGTAAAGTGGTCGCCCGACGGGTCCTCCTTCCTCACCAGCTCCGACGATAACTCCCTCCGCTTGTTTTACTTgtaagccgcgcgcttacatttttctgatacgctctctcttgcgcccgcggcgagtggctaaaactaggggcattcccttcttccgttcgacag

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