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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCCCCGCCACGACCCCTCAGCCCTCACACAAGAGACGCAGCTGCGAGTCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGgtaaggtgagtccccatcccgctccttccctaccaccctaattcgcgctctgaggattaggtggaactggaactggatgcccgcgccgcgcagctccagt...

Basic information

species Zea mays
transcript GRMZM2G133698_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211501121|gb|FL128998.1|FL128998
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGNTAAG                     
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGC-----Ggtaaggtgag ... tgctgc
EST: gi|211505822|gb|FL129027.1|FL129027
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGGTAAG                     
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGC-----Ggtaaggtgag ... tgctgc
EST: gi|211312615|gb|FL128951.1|FL128951
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGGTAAG                     
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGC-----Ggtaaggtgag ... tgctgc
EST: gi|211316666|gb|FL128979.1|FL128979
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCG                         GTATGGCTTCGACATTCGGTGCCACTTCTACTGTCGGCCTTATGGCTGCTC
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGgtaaggtgag ... tgctgcacagGTATGGCTTCGACATTCGGTGCCACTTCTACTGTCGGCCTTATGGCTGCTC
EST: gi|211314638|gb|FL128959.1|FL128959
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGGTAAG                     
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGC-----Ggtaaggtgag ... tgctgc
EST: gi|18659978|gb|BM500622.1|BM500622
EST:     TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGGTAAG                     
genomic: TCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGC-----Ggtaaggtgag ... tgctgc

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCCCCCGCCACGACCCCTCAGCCCTCACACAAGAGACGCAGCTGCGAGTCCGCCAGCCTTATCCTCCTCCCCGTCTCCGGCTCCAACCCGCAAGCGCGgtaaggtgagtccccatcccgctccttccctaccaccctaattcgcgctctgaggattaggtggaactggaactggatgcccgcgccgcgcagctccagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcgc