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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGGAGGAGGGTCCCGCCCGCCGAGAACGGGCACGGCCATGACGCCCCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatccgtgcacccgccttgctcattgttcgctgctgctctgctcttgttatgcgtagaccgtgctccgtacctagcgcctctctggtgcggtgt...

Basic information

species Zea mays
transcript GRMZM2G133621_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76933569|gb|DV173498.1|DV173498
EST:     CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC                         GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
EST: gi|211454144|gb|FL044270.1|FL044270
EST:     CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC                         GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
EST: gi|211454143|gb|FL044269.1|FL044269
EST:     CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCAC                         GCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT
genomic: CCGCCGCCCTCCAGGCGGTCCTCCGCCTCCCTCTCCCGCGGCCACTCCACgtacgtgatc ... ttcttttcagGCCGCTGACTGGCGAGAGGACCGTGAAAAGGCTGAGGTTGTCCAAGGCACT