Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGCGGAGGGGCAGGCGGCGACGATGCCGTGCTGTTCAAGGGGTCCGCCATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCGgtacgcgcggctttatttgcttgtttctgtcgcgtagactgctcgcggtgcggccgtgctgctggtgcactgtgcttcgttcgtcgcgttcagggaattt...

Basic information

species Zea mays
transcript GRMZM2G133226_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 1
AACGGCGGAGGGGCAGGCGGCGACGATGCCGTGCTGTTCAAGGGGTCCGCCATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCGgtacgcgcggctttatttgc-ttgtttctgtcgcgtagactgctcgcggtgcggccgt--gctgctggtgcactgtgcttcgttcgtcgcgttcagggaattt
   ||||| || |  |||||||||||||||| |||||||||||||||||||||||| || |||||||    |||||||||||| |||||||| ||||||||||||  |  |   ||  ||   | ||||    | |   || |||  | |||| | |   | |   ||    | || | ||||| |      |  | |  |  
GGGGGCGGGGGCGGCGGCGGCGACGATGCCGCGCTGTTCAAGGGGTCCGCCATGACGCGGCGCGGCGCGGTCGCCGCGCTCTCCTACATGGCCTGCTCCGgtacgttcc-cccgatccgcgccgcttcttcttcttcttcttctc-tgatgcgtcggctgggtctcgggatgcggt-cgtcgttagcgagaatttgagggtgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148947034|gb|EC892331.2|EC892331
EST:     CATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCG                         TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTT
genomic: CATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCGgtacgcgcgg ... caatttgcagTGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTT
EST: gi|91054599|gb|EB165017.1|EB165017
EST:     CATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCG                         TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTT
genomic: CATGACCCGCCGCGGCGGCACCGCCGCGCTCTCTTACATGGCATGCTCCGgtacgcgcgg ... caatttgcagTGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTT