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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATAATGTATGGATAGCATGGGTGTCCACTGAATTATCTCACATTCTTTCATATGATCTCAATAAAGACGATTCACTATCCTCTGCAACTCCTTTGAGGgtacgcctttgaaaccatggtatcttttagtgtataatacagtgtactttttgaattacatgactggattttatttagtttggaaaacttaagtagatta...

Basic information

species Zea mays
transcript GRMZM2G132991_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132991_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g56910.1 (Oryza sativa), 5'ss of exon 1
TCATAATGTATGGATAGCATGGGTGTCCACTGAATTATCTCACATTCTTTCATATGATCTCAATAAAGACGATTCACTATCCTCTGCAACTCCTTTGAGGgtacgcctttgaaaccatggtatcttttagtgtataatacagtgtactttttgaattacatgactggatttta--tttagtttggaaaacttaagtagatta
 |||    | |||||||||||| |||||||||||||||| ||  |||| |||||||| ||||| ||||| |||||| | ||||   |||| |||||  |||||||| |      || |  |||||||     | | ||       ||   || |     |  |  | ||| ||  | || ||   |   ||      |||| 
CCATGGATTGTGGATAGCATGGTTGTCCACTGAATTATCACAGCTTCTCTCATATGACCTCAACAAAGATGATTCATTGTCCTTATCAACCCCTTTACGGgtacgc-tccatgtccctcttatctttccaattgttatctttccaacccctttacgggtaaaag-gcattctaagtatatttcttactgctgtttctgattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60351819|gb|DN218792.1|DN218792
EST:     CATATGATCTCAATAAAGACGATTCACTATCCTCTGCAACTCCTTTGAGG                         ATACAGAATTCTAATCGCTATAGTTGTGTGGTTTGGTTGCATTGTTAGGGC
genomic: CATATGATCTCAATAAAGACGATTCACTATCCTCTGCAACTCCTTTGAGGgtacgccttt ... tttcttgcagATACAGAATTCTAATCGCTATAGTTGTGTGGTTTGGTTGCATTGTTAGGGC