1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACGAGGGCGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcctcccccttctccgacgcgctcgctccgaagtccgaacccgcggccgtcgttttcctcggatgcgaaccttcatgacctagattcgctgct...
species | Zea mays |
transcript | GRMZM2G132796_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATG TGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTGEST: gi|71759308|gb|DR957245.1|DR957245
genomic: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcc ... tgttttgtagTGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTG
EST: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATG TGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTGEST: gi|148954038|gb|EC899435.2|EC899435
genomic: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcc ... tgttttgtagTGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTG
EST: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATG TGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTG
genomic: CGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcc ... tgttttgtagTGCGGTCCTTTGGAACCGAAGGTCGGAAGAAAGACGGAGTGCAGATTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACGAGGGCGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcctcccccttctccgacgcgctcgctccgaagtccgaacccgcggccgtcgttttcctcggatgcgaaccttcatgacctagattcgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcgctc