Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaactggaataccctgttcgcttctatcgccgcttcataattaaacatggacctgttatgcagaaagtgctcgtgttttttacacgatttatag...

Basic information

species Zea mays
transcript GRMZM2G131998_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131998_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g53530.1 (Oryza sativa), 5'ss of exon 1
GCGGTGCGGCGGAGTTCGCGCCGGCGCTCGTCGCCGCCCACCCACACGGCAACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaa-actggaataccctgttcgcttctatcgccgcttcataattaaacatggacctg-ttatgcaga-aagtgctcgtgttttttacacgatttatag
|||| |||||||||||||||||||| ||||||||||||||||| | ||||  |||||||||||||||| |||||||||||||||||||||| ||||||| ||  ||||  |     | | ||  | |||    |  | || | ||  |   |  |  |  |  |  |  ||  ||||  |  || |||| |      ||    
GCGGCGCGGCGGAGTTCGCGCCGGCTCTCGTCGCCGCCCACCCGCTCGGCCGCTCCGTCGCCGTCGCCGTCGGGCCCGAGCTCCGCGTGTTCGATCTCAAgtaaggaacgcctctcttcgctcgtggctcgccttcctgcct-attgtcggatctcaatttactcttatagttaagtagtt-tgattttgatggagattggg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211048672|gb|FL294333.1|FL294333
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051626|gb|FL294345.1|FL294345
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051623|gb|FL294342.1|FL294342
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048680|gb|FL294341.1|FL294341
EST:     ACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: ACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCG-TGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051624|gb|FL294343.1|FL294343
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048669|gb|FL294330.1|FL294330
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048668|gb|FL294329.1|FL294329
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048676|gb|FL294337.1|FL294337
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGNCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048673|gb|FL294334.1|FL294334
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051633|gb|FL294352.1|FL294352
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTTATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211051625|gb|FL294344.1|FL294344
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
EST: gi|211048667|gb|FL294328.1|FL294328
EST:     AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAG                         GGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC
genomic: AACTCCGTCGCCGTCGCCATCGGGCCCGAGCTCCGCGTGTTTGATCTCAGgtttggaaac ... tttcctccagGGCTGGTCATCCAGTTTCATTGTCAGATGATTGTGGTGGCCATTCTCATTC