1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTGGCCACGGAGGAAATGGTGGTCTACTGCTTTGACACCCTCGTCGCCTATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctccccgcagcgatcgaaaccgggccgtgttgcccccatatcgaggaggtggttttggatccatttcgatatagggttaggccaattcgtgtta...
species | Zea mays |
transcript | GRMZM2G131667_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCA CCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCTEST: gi|211302255|gb|FL001844.1|FL001844
genomic: GCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... gtaactttagCCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
EST: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCA CCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCTEST: gi|30160506|gb|CB924235.1|CB924235
genomic: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... gtaactttagCCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
EST: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCA CCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCTEST: gi|211302262|gb|FL001851.1|FL001851
genomic: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... gtaactttagCCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
EST: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCKAGGATGGAAACCA CCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCANAACCACGCCTEST: gi|38229665|gb|CF919978.1|CF919978
genomic: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... gtaactttagCCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
EST: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCA CCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
genomic: TATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctcc ... gtaactttagCCCATTGTTTGTGACCTGGAAGAAGGCTGCCAATGGTTCAGAACCACGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGCCACGGAGGAAATGGTGGTCTACTGCTTTGACACCCTCGTCGCCTATTTCACCGGCGAGCGGCCGCCGCCTCCCGCCTTCGAGGATGGAAACCAgtaagcctccccgcagcgatcgaaaccgggccgtgttgcccccatatcgaggaggtggttttggatccatttcgatatagggttaggccaattcgtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccccc