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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACTACCCTGAGTATTTGACAGGAGAGTACCCTGGAGATTATGGGTTCGATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcaccgttgttcctttccttccgttaactatactgttttcttttcttccccatatatattagtattaagcggcagtggaacaatagcttgtttgt...

Basic information

species Zea mays
transcript GRMZM2G131489_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131489_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g12540.1 (Oryza sativa), 5'ss of exon 2
ACGACTACCCTGAGTATTTGACAGGAGAGTACCCTGGAGATTATGGGTTCGATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcaccgttgttcctttcct-tccgttaac-tatactgttttcttttcttccccatatatattagtattaagcggcagtgg-aacaatagcttgtttgt
|||| ||||| | | || | || |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||    ||||   ||| || || | |     ||| | ||  |   || ||| |  |  ||        |||       |  || || |   
ACGAGTACCCGGCGCATCTCACCGGAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTTTCGCAAACTACTTCAAgtatgtcactgttgcaattttctgatccatttacatttgagaatttatattactttgcaaataaaaaaagatagtagaagagtactggttagggcctgat---

upper sequence: GRMZM2G131489_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0122g00430.t01 (Vitis vinifera), 5'ss of exon 3
ACGACTACCCTGAGTATTTGACAGGAGAGTACCCTGGAGATTATGGGTTCGATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcac-cgttgttcctttccttccgttaactatactgttttcttttcttccccatatatattagtattaagcggcagtggaacaatagcttgtttgt
| ||||| ||||  ||| | || |||||    ||||| |||||||| || |||||||| |||||||| | ||||||||| ||||||  ||| || |||||||||||||   ||  |  || |  ||    ||  || |        |    |    |  | |     | || |     ||   |||  |||        | 
ATGACTATCCTGCATATCTCACTGGAGAACTTCCTGGGGATTATGGCTTTGATATTGCTGGTCTGGGCAAGGATCCTGTGGCTTTCCAAAAATATTTCAAgtatgtcatgtgtcttctctattttttttataggtaaataagagaataaattagagcgcaaagggc-gcatcagagtacacatgaagcatacaagaagggc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091629|gb|DV520003.1|DV520003
EST:     GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAA                         GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
genomic: GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcacc ... atttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
EST: gi|78091368|gb|DV519742.1|DV519742
EST:     GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAA                         GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA
genomic: GATATTGCAGGTCTGGGAAGGGATCCTGTTGCTTTCGCAAACTACTTCAAgtatgtcacc ... atttttccagGTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA