Sequence
atgc intronic sequence ATGC exonic sequenceGGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatctctcctaccgaacctcgttgagctgcgccgtccggctcatctcaatctgtgtgccgctttgatcacggatgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 5'ss of exon 1
GGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatctctcctaccgaacctcgtt--gagctgcgccgtcc---ggctcatctcaatctgtgtgccgctttgatcacggatgc
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GTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACGGCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGgtaagcgc----gatcccccccccccctcccccccgctaatttcgatccgggctcgattgatcgggggttcggttgggttggctccctgctttgatctgtgagg-
upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G07080.1 (Glycine max), 5'ss of exon 1
GGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatc-tctcctaccgaacctcgttgagctgcgccgtccggctcatctcaatctgtgtgccgctttgatcacggatgc
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----------ATGCAGAGACGAAGTCCTCCGAAGCACAGGCACGATGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGCCCTGCGCCTCGAAAATTGgttagtttcttattcttctaacgtaattgtagttttattcgcgcgattgaatgacctggttccattttcttcgatcaatct-cctcgtcaatactattttc
upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G06980.1 (Glycine max), 5'ss of exon 1
GGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatctctcctaccgaacctcgttgagctgcgccgtccggctc-atctcaatctgtgtgccgctttgatcacggatgc---
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----------ATGCAGAGACGAAGTCCTCCGAAGCACAGGCACGACGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGCCCTGCGCCTCGAAAATGGgttagt-ttcttattcttctaatgtaattgtagtttta---ttcgcgcgattgaatgaactggttctattttcttcgatcaacctccttgtcaatactcttctc
upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0002g07300.t01 (Vitis vinifera), 5'ss of exon 1
GGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatctctcctaccgaacctcgttgagctgcgccgtccggctcatctcaatctgtgtgccgctttgatcacggatgc----
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TAACTCTCCCGTGTCAAATCCCAGCCCTCCAAGGTACCGGCATGATGGCTCCTCGCCCCTCCCCCTCGGCATGGATTGGAGCCCTCCCCCTCGGAAGTGGgtatgc---cacgattttgattttaat-tttgattttgattttttttcgtttttggttcccgggaaacgaggggaggggaaggcaggagtttttgaattggtgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211302445|gb|FL244051.1|FL244051EST: CCTCGCCGTTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGG GAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTAC
genomic: CCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgccc ... ctgcatacagGAGGGAAGGAACACCATATGGCCACATAATCCTCAAACAGGTTGGAGTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGGCGCGCAAGAAGGCCCCCAGCCCCCCGAAGCACCGCCACGATGGCACCTCGCCGCTGCCGCTCGGCATGGACTGGAGCCCTCCCCCGAAGAGATGGgtaagcgcccgcgaccccctcccccatctctcctaccgaacctcgttgagctgcgccgtccggctcatctcaatctgtgtgccgctttgatcacggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG