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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcag

Basic information

species Zea mays
transcript GRMZM2G130889_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 5
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtct--aatttttgttttattttgtttgtttatcttcag
                     ||||||||| || ||| ||  ||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||  || || |||||||| |||         |||||             | ||||||| ||     |  | ||||||| | |  | |||  ||||        | || || | | || || | |||| || |    | ||| ||||||||||| | | || |       
---------------------CTGGGTGGCCGATTCACTAAGCTTTGACAAGGATTACGATGCAAGTGTCTTTGAAACGACCATAAGgttgccttataaggtttactattgttgtagtattttttt---------tctta-------------aaatatttgacttctttgatcgatgctatgtaggcagacca-catt-------ttttagaacataaaagtatatctagttttttctaagtttctgttttatttt-tatattcag------

upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 5
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcag
                      ||||| ||  | || || || ||| ||||||||||||| || ||||||||||| || ||||||||||| | ||||||||||||| |||    | | | ||  ||      | |    ||||   |   || || |  |  | |  |      | || | | |  ||    |||  |  || ||  | | |   ||  || | |||                                            
---------------------ATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAGgttactttataaggtttac-tttgcagttgaagttccttccccatttacaaaagttatatttttg-agctcatgtgttagactactgattgtttttttaatcattctttttgttggtcgatttcc---accaaaatccag--------------------------------------------

upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 4
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcag
                      ||||| ||  | || || || ||| ||||||||||||| || ||||||||||| || ||||||||||| | |||||| |||||| |||    | | | |   ||      | | |  | ||   |   ||     || ||  | | |   |  ||  | | |   ||  | ||   | || |           ||  || | |||                                            
---------------------ATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAGgttactttataaagtttac-tttgcagttgaagtcccttccccattta-caaaattatatttttgagctcatgtg--ttagacaactgatattgtttttttaatctttttctttgttggtcgatttccaccaaaatccag--------------------------------------------

upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATA-AGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataac-tacagctaggttgtctaatttttgttttattttgtttgtttatcttcag
                      ||||| ||    |||||||| || ||||||||||||| ||| ||| | ||||| || ||||||||||||||||  | ||||||||| |                               |||| ||  || ||  ||     || | |||    ||  | | | | | || ||    | ||      | | || |  |    |  |  |  |   |||    ||   | | || | ||||||    |||||
---------------------GTGGGTAGCAAGCTCATTAGATTTCGACAAGGATTATGCTGCCAGTATGTTTGAGACAACCATAAGgttgcatttaacaggtttaccat-------------------------------gttttttttctacatgta-----ctaagaagagtcatcttgtttaggt-tatctgttgtgtgtagttaacaaaatatgtggtatggaagtgtggcatctgtgcttatatattttctctttgttggctttcag

upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 5
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcag-------
                      ||||| ||  | ||||| || ||  ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||   |   || | | |||| || | ||||     | ||| |       ||| |||  |     |    |      | |||  | ||    |    ||        | ||      |  ||    |      | |  ||||  ||||||||| |||  || | ||          
---------------------GTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAGgttgcattataaggtttaatat--gtagattgtttaatt-tgtcctttctcttgttcggaagac-cagttatgggttatgatgaccttgcaatctctaaagatgaacttgggattgaaatcttgcatttttgacttatcatttttggatttttttttaattttattttattttattctttttgaaatccag

upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv11s0052g00140.t01 (Vitis vinifera), 5'ss of exon 5
AATGCCTATGTCATATAACAGCTGGGTGGCGGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGGTTGCATTATAAGgtttacctttattatagtatttatttatatcctcatcttagtttgttccctgcagatatttggctgaaaaggccaatgctatctggatataccttcattatgatccctatacaaaacataactacagctaggttgtctaatttttgttttattttgtttgtttatcttcag
                      ||||| ||  | || || || ||  ||||| | ||||| || ||||||||||| || |||||||||||||||||||||||||    |||||    |||||||||| ||  | |  ||  ||| ||  ||        ||||    | ||| |    || |||||          |  | ||  | |||     ||||  | || |||   || | |  ||||||| |  || ||||   |         
---------------------GTGGGTTGCAAACTCGTTGGATTTCAACAAGAACTATGAGGCTAGTGTTTTTGAGACAACCATAAGgttgcattataaggtttcatcttatt----tatttattta-ataataagtttctttttttttct--------ttggggacagaggtc----ctctctgggatggttgagaggaagaagcgtatg----acatgtccactgct---ttttatcctttttgtatacttatgttgaatgcag-----