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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTCAAGCGGCCCAAGCGCCTGGCGCTCCTCTTCTTCGTCTTCGTCGCGGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAGgtgcgcccctctcgccccgcgggagctcccctgtcccgggctggagagtttagtgaccgggatctgattagttcctgtcgcgccttgcttagcatttcga...

Basic information

species Zea mays
transcript GRMZM2G130889_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 1
CTACCTCAAGCGGCCCAAGCGCCTGGCGCTCCTCTTCTTCGTCTTCGTCGCGGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAGgtgcgc---ccctctcgc-cccgcgggagctcccctgtcccgggctggagagtttagtgaccgggatctgattagttc--ctgtcgcgccttgcttagcatttcga-
 |||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||| |||    |||||| | ||||  | || |||||||  ||||| ||  |        | | |||||||||   |||   ||| |   | | |||| | |||||   
TTACCTCAAGCGGCCGAAGCGCCTCGCCCTCCTCTTCTTCGTCTTCGTCGCCGCCACCTTCGCCTTCTGGGATCGACAGTCGCTCGTCCGCGAGTACGAGgttcgcgcctcctctcccacccgttgaagttcccctgatccgggttgagg-------cggcggggatctgaccggttttgctgcccgccttagcttcggatttcctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057740|gb|BM736407.1|BM736407
EST:     CAGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAG                         TCTGAGATTTCCCGATTAGAAGATGATATAAATCGGTTGCATGACCAG
genomic: CGGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAGgtgcgcccct ... ctattttcagTCTGAGATTTCCCGATTAGAAGATGATATAAATCGGTTGCATGACCAG