1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTACAGATTTCGCAGTTTTGCTGGGGGTAACTACGGAATGGGGGGCGGATCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattcctgatctgattccccgacttcagattcttagctcttgagctgctcgtctctgcgttccccgtgcgactcgtgagcggtgctgctattcca...
species | Zea mays |
transcript | GRMZM2G130548_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|89755506|gb|DY685902.1|DY685902
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211067663|gb|FL012963.1|FL012963
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211070406|gb|FL012981.1|FL012981
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|32793956|gb|CD946192.1|CD946192
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: GATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTGTAEST: gi|211064940|gb|FL012961.1|FL012961
genomic: GATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCTGTA
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211070408|gb|FL012983.1|FL012983
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211067666|gb|FL012966.1|FL012966
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211070404|gb|FL012979.1|FL012979
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211067675|gb|FL012975.1|FL012975
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCEST: gi|211067676|gb|FL012976.1|FL012976
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCC
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCTEST: gi|211067664|gb|FL012964.1|FL012964
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
EST: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGG GCCTTTGGTTTCACTTGCGTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattc ... gtcactgcagGCCTTTGGTTTCACTTGCGTATCCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACAGATTTCGCAGTTTTGCTGGGGGTAACTACGGAATGGGGGGCGGATCCGGATCTTTCCTCAAGGTCTTGGTCAACAACATGGATGTCCTCGCGGGgtacgcattcctgatctgattccccgacttcagattcttagctcttgagctgctcgtctctgcgttccccgtgcgactcgtgagcggtgctgctattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgtgc