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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAGGTCCGGCGCCGCCGCCTCGTTCCTGGAGCGCCGCGAGTCCGAGCGCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgtttccgtttcccaacactcttcagctattccgccccgtgaggtgttcattttgggagtgacccgccgttgagaattcgtgcaatccgtgctgttttgattttcgaatgctctgctattgacgatacttcggttttgtttgctgtttcctgtttcaattcgtag

Basic information

species Zea mays
transcript GRMZM2G130332_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130332_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g37960.1 (Oryza sativa), 5'ss of exon 1
CCCCAGGTCCGGCGCCGCCGCCTCGTTCCTGGAGCGCCGCGAGTCCGAGCGCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcg----cctgtttccgtttcc-caacactcttc---------agctattccgccccgtgaggtgttc--attttgggagtgacccgccgttgagaattcgtgcaatccgtgctgttttgatt--ttcgaatgctctgctattgacgatacttcggttttgt-ttgctgtttcctgtttcaattcgtag
||||||||| | |||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || || |||||||| ||||||||    | |  |  || ||||    |||| |||         |  | || |  ||| | |  | ||   ||       || | | | || |  |  | |  | |||  | || || |    |  ||   | ||  || | |      |  || | ||| || |||   |||  |  ||||        
CCCCAGGTCGGCCGCCGCCGCCGCGTTCCTCGAGCGCCGCGAGTCGGAGCGCGCCCTCCACTTCGTCAAGTACCAGGGCCTTGGGAACGACTTCATCATGgtgcgacgccttactagcgcttccatttcacttttcttagaaccgatttgttgcttcccttcaatttttttaatcccctttgtaatcagtcgcttcgtctgcacg-aattagagcagtctctgctgctttagacgcggtgatttctgtatttttttgatttagtcttggattttttttcttcag-------

upper sequence: GRMZM2G130332_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv08s0040g02540.t01 (Vitis vinifera), 5'ss of exon 1
---CCCCAGGTCCGGCGCCGCCGCCTCGTTCCTGGAGCGCCGCGAGTCCGAGCGCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgtttccgtttcccaacactcttcagctattccgccccgtgaggtgttcattttgggagtgacccgccgttgagaattcgtgcaatccgtgctgttt--tgattttcgaatgctctgctattgacgatacttcggttttgtttgctgtttcctgtttcaattcgtag
   ||    |   ||| |     | || || ||||| |||   ||    |       ||| || |||||||||||||| ||||||||||||||||||||  ||||    || ||    |||        || |  |||     || | |  |  ||  || |    || | |       ||||||  | |    ||   || | |||  |||||||                                                             
AGCCCTTGAGAAGGGCTCTCAGACTTCTTTTCTGGACCGCAAAGAAAGTGGAT---TTCTGCATTTCGTCAAGTACCATGGCCTCGGCAATGACTTCATCTTGgtaattcttttattattt--------tcatttgcttggttgctcgggaaaatg--cagtaaaagaatcata---atttgagacctaggaagatatttggtttttggtgatttt-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155814|gb|DY400603.1|DY400603
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|71329026|gb|DR801212.1|DR801212
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|74233526|gb|DT641440.1|DT641440
EST:     GCGCTCTCCACTTCGTCAAGT-CCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|71324621|gb|DR799009.1|DR799009
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|91052902|gb|EB163320.1|EB163320
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|148970899|gb|EE021693.2|EE021693
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|93014173|gb|EB639693.1|EB639693
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|91878422|gb|EB408379.1|EB408379
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|211442704|gb|FL002346.1|FL002346
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGTATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCTGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|148961368|gb|EE012101.2|EE012101
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|78088914|gb|DV517307.1|DV517307
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|211442708|gb|FL002350.1|FL002350
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|91869787|gb|EB400540.1|EB400540
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACATGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|76014966|gb|DT942136.1|DT942136
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|71769300|gb|DR967237.1|DR967237
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|76286735|gb|DV026303.1|DV026303
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|78088792|gb|DV517185.1|DV517185
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|50337846|gb|CO532972.1|CO532972
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|22133843|gb|BQ833933.1|BQ833933
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|71443835|gb|DR824885.1|DR824885
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|26558147|gb|CA830382.1|CA830382
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|22715577|gb|BU197842.1|BU197842
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|101383177|gb|EB813643.1|EB813643
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|76017579|gb|DT944749.1|DT944749
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|211442703|gb|FL002345.1|FL002345
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|211508993|gb|FL162734.1|FL162734
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|101395236|gb|EB819548.1|EB819548
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|148961806|gb|EE012586.2|EE012586
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|76915664|gb|DV166066.1|DV166066
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGA
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGA
EST: gi|211442709|gb|FL002351.1|FL002351
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|26559567|gb|CA831802.1|CA831802
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|211442702|gb|FL002344.1|FL002344
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
EST: gi|148986800|gb|EE030596.2|EE030596
EST:     GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATG                         GTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG
genomic: GCGCTCTCCACTTCGTCAAGTACCAGGGCCTCGGCAATGACTTCATTATGgtgcgcctgt ... caattcgtagGTGGACAACAGGGATTCGTCGGTGCCGAAGGTGACGCCGGAGGAGGCCGCG