Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17929655|gb|BM266615.1|BM266615EST: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAG TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
genomic: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGgcaaactcag ... atgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
EST:
gi|18171401|gb|BM341241.1|BM341241EST: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAG TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
genomic: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGgcaaactcag ... atgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
EST:
gi|18162782|gb|BM332621.1|BM332621EST: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAG TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
genomic: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGgcaaactcag ... atgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
EST:
gi|18173414|gb|BM348802.1|BM348802EST: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAG TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
genomic: CCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGgcaaactcag ... atgtatgcagTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGGTGGCCACAGAGACTCCGTTCCATGTCCTGGCGGTGGACGACAGCCTCCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGgcaaactcagccaccggatgattattcccgtctcctttgcctctgctctgagtctcacgaaaggtggccggcccctttggcttttgtttctgaatgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC