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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGAACTTGGCCTGGACGAGCAGCTGAAGAGGGCGTTGAGGAAGAAGGGCATCCTCAAGGCCACCCCGATACAGCGGGAAGCCATCCCGCTCATCCTGgtgcgtggtttatggctttcatcttgcttttagtgtgcttcttttctgattcgtgcgtattcagtccagacgtttggcctctgctatccaatcagcttca...

Basic information

species Zea mays
transcript GRMZM2G129554_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129554_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g51900.1 (Oryza sativa), 5'ss of exon 1
CGATGAACTTGGCCTGGACGAGCAGCTGAAGAGGGCGTTGAGGAAGAAGGGCATCCTCAAGGCCACCCCGATACAGCGGGAAGCCATCCCGCTCATCCTGgtgcgtggtttatggctttcatcttgcttttagtgtgcttcttttctgattcgtgcgtattcagtccagacgtttggcctctgctatccaatca-----gcttca--
 || || |||||| |||||||||| ||||||||||| ||||||||||||||| |   ||||||||||||||| ||| | || ||||||||||||||||||||||||| ||| |||| | |||  |   |||    |  || |  | || || ||  | ||| | |  | |  || | | | |  |||||||| |     | ||||  
TGACGAGCTTGGCTTGGACGAGCAACTGAAGAGGGCTTTGAGGAAGAAGGGCTTGGACAAGGCCACCCCGATCCAGAGAGAGGCCATCCCGCTCATCCTGgtgcgtgatttctggcatccatgctttgttt----tttttttgctttgttttgt-tgaatt-actggaaatattcgtcgt-taatatccaattattagtgtttcaat