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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGCCGCCGTCTGCCGCGCGTGGAGGGAGATGTGCCGGGAGATCGTGCTCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaacttagtcctttggcctaattacctgaatgttttttttgggtagtattactaacatttgacagtattgtttgccttcacag

Basic information

species Zea mays
transcript GRMZM2G129288_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129288_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g36190.1 (Oryza sativa), 5'ss of exon 2
CTGCGCCGCCGTCTGCCGCGCGTGGAGGGAGATGTGCCGGGAGATCGTGCTCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaacttag--tcctttggcctaatta---cctgaa-tgttttttttgggtagtattactaacatttgacagtattgtttgccttcacag-----------------------------------------------------------
||| || ||||||||    || ||||||||||||||    ||||| ||||| ||||||||| | ||||||||||||||||||||| ||||||| |||||||||||| ||    |||| |     ||  |   | | || ||  | || |    | |  || |  | |     |||  |     ||| ||                                                              
CTGTGCTGCCGTCTGTAAGGCATGGAGGGAGATGTGTAAAGAGATTGTGCTGAGCCCGGAGTTTTGCGGGAAGCTTACCTTCCCGCTCTCTCTAAAGCAGgtaaaatttcacatcctgtaatgaaagcagaacttaaactgactgttgttaagaattatattttcgtaccttagtgatagcaacctgcaagtgtggttgttgcttattcatttgttcctctcaaattcataatccttgttttgactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426772|gb|DR807822.1|DR807822
EST:     TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAG                         CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
genomic: TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaactta ... gccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
EST: gi|149111284|gb|EE294782.2|EE294782
EST:     TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAG                         CCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC
genomic: TCAGCCCGGAGGTCTGCGGGAAGCTTACCTTCCCGGTCTCTCTCAAGCAGgtaaaactta ... gccttcacagCCTGGGCCTCGAGACGGGATGATTCAGTGTTTCATAAAGCGCGATAAATCC