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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCTGCCCGTGCAGTCGCCCGGCGCCACCGCCAGCTCCCTGTGGTCGCGCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcag

Basic information

species Zea mays
transcript GRMZM2G128995_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 1
GTCGCTGCCCGTGCAGTCGCCCGGCGCCACCGCCAGCTCCCTGTGGTCGCGCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatcccctccgacccgtctccttcacccgccgggatttaatctcgcgtagcctcaccgtccgcgcag---------------
||| || ||||||||| | || ||| |||||||||  || || ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| | ||| |     ||||||  |  ||    ||    | |    | ||||||| ||| |                   
GTCTCTTCCCGTGCAGACTCCTGGCTCCACCGCCAATTCTCTCTGGGCGCGCCTCCAGGACTCCATCTCGCGCCACTCCTTCGACACGCCGCTCTACCGGgtaagc-atcctccccgccttccttccttc--cttccttccttccgccaccaccatcctcaccctcctcctccgcctcccgcccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211136925|gb|FL422189.1|FL422189
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211377201|gb|FL412470.1|FL412470
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211539519|gb|FL409049.1|FL409049
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211363177|gb|FL385284.1|FL385284
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211441636|gb|FL403705.1|FL403705
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211202638|gb|FL424402.1|FL424402
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTMTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211247493|gb|FL399189.1|FL399189
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211504705|gb|FL413781.1|FL413781
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|149102700|gb|EE288050.2|EE288050
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|15312764|gb|BI478361.1|BI478361
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211264685|gb|FL426671.1|FL426671
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAASGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
EST: gi|211217327|gb|FL397497.1|FL397497
EST:     GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGC                         TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC
genomic: GCCTCCAGGACTCCATCTCCCGCCACTCCTTCGACACCCCGCTCTACCGCgtaagcgatc ... gtccgcgcagTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTC