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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcggatgggtgccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G128995_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaacccca-------tcggatgggtg--ccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag------------------
||||||||||||||||||||||||| || ||||||||||| || |||||||  ||| | |||||||| ||||||||||||||||||||||||||||| |||||    ||   || |   |||         || | |  | |   ||   ||   |   ||   ||| |     |  |   |   |                  
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcg--gatgggtgccctgttcagc-ttaaaagcttctgtgttgatcgcgcgcgcag-----------------------------------------------------------------------------------------------------------
|||||||| || | ||||| ||||| |||||| | |     ||  |||| |||||  ||||||||||||||||||||||||||||  ||||| | || |||   ||       | |  |  | |||   |||  | |   | ||     ||  |   | |  ||||  | |   |                                                                                                                
ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttccgtttcataatcaatctctgatctgcgttttcttttatattttatattaccatgttattggtatggagtatcattgtctttgtcgatcactaatcttcgtcggagaaactggttggccacctctggtggggtctcccttcccagccattttttatctgtctttttttattggttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60358961|gb|DN225934.1|DN225934
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|22491457|gb|BU051380.1|BU051380
EST:     CACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCTTCTCAAGGAGAT
genomic: CACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|148984567|gb|EE029570.2|EE029570
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGAATGAGGGCAAGTACCCCACAATG
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATG