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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTCAAGCGGCCCAAGCGCCTCGCGCTCCTCTTCTTCATCTTCGTCGCGGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAGgtgcgcccctctcgccccacgggaggtcccctgatccgggctggagagtttagtgaccgggatctgattagccctgtcgcgccttgctttgcatttcgat...

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 1
CTACCTCAAGCGGCCCAAGCGCCTCGCGCTCCTCTTCTTCATCTTCGTCGCGGCCACCTTCGCCTTCTGGGACCGCCAGTCGCTCGTCAGCGAGTACGAGgtgcgcccctctcgccccacg----ggaggtcccctgatccgggctggagagtttagtgaccgggatctgattagccctgtcg--cgcctt-gctttgcatttcgat
 |||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||| ||| ||||    |||||     | || |||||||||||||| ||  |        | | |||||||||   |   ||  |  |||||| |||| | |||||  |
TTACCTCAAGCGGCCGAAGCGCCTCGCCCTCCTCTTCTTCGTCTTCGTCGCCGCCACCTTCGCCTTCTGGGATCGACAGTCGCTCGTCCGCGAGTACGAGgttcgcgcctcctctcccacccgttgaagttcccctgatccgggttgagg-------cggcggggatctgaccggttttgctgcccgccttagcttcggatttcctt