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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaacacatctcgcaggactcgtgcttgcatgcgtggtcttcaatttcgttgagcaagttgcgtgcatcacagtactgatcttaacataatccgct...

Basic information

species Zea mays
transcript GRMZM2G128688_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 1
GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaacacatctcgcaggactcgtgcttgcatgcgtggtcttcaatttcgttgagcaagttgcgtgcatcacagtactgatctta--acataatccgct----
|||||||||||| || |||||||| ||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||    || || ||  ||  ||||| ||  ||  |||||||     |   |       | |||   ||   ||       || | ||   | |    | |     
GGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGgta----acccaccttccaccactcgcgcgcgc-cgcgtggttagtgagggcacacgagaggttaaatgt-ccattccgtcgaacatactgcgtgcatcacgtgag

upper sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 1
GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaacacatctcgcaggactcgtgcttgcat-gcgtggtcttcaatttcgttgagcaagttgcgtgcatc---acagtactgatcttaacataatccgct---
|||||| ||||| || |||||||| |||||  |||||||||||||||||||||| || |||   || ||||||||||||||||| |||||  | ||||||||   |  |  |  |   |    |    |   |   || | || ||||||    | |       |  | | |||   | || ||| ||     | | |     |   
GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttcaattcttttcaccctctccgcttcgttttcaatcgaatcggatcttctttgagaatccggaaagcactaatgaatgcttcaatttttcag

upper sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 1
GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaacacatctcgcaggactcgtgcttgcatgcgtggtcttcaatttcgttgagcaagttgcgtgcatcacagtactgatcttaacataatccgct--
|||||| ||||| || |||||||| |||||  |||||||||||||||||||||| || |||   || ||||||||||||||||| |||||  | ||||||||   |  |  |  |  |||   |    | |    |  | || ||||||    | |      | | |      | ||   | |   |     |||       
GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttccagtttttcaccgtctccggttcgttttcaatcgaatcggatct-tcgagaatgcaaaagcgttaacggtgcttgaatttttcag

upper sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 1
GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgta--ggtaacacatctcgcaggactcgtgcttgcatgcgtggtcttcaatttcgttgagcaagttgcgtgcatcacagtactgatcttaacataatccgct
|||||||||||| || ||||| || ||||| |||||||||||||||||| | || || ||||| || ||||||||||||||||| |||||||| ||||||||     |  |||    |  |  | || | | |         |     | ||  |   || |||     || |  |   ||   |  || |  || |    |
GGACCGGCTCCTCCGGCAGTGTGGCGCCGACATCCCCCACGAGCGCGCCCTCGACTCCATCAGTCTCGAGCGCGAGCGCGGCATCACCATTGCTTCCAAGgtcctattctcactaaccataaaaatccttcctttggtttccgaaagaatttgggaaaagaaagagttttgga--aagttatgaaatttgatttagttttgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30705082|gb|CD058659.1|CD058659
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
EST: gi|149065568|gb|EE286688.2|EE286688
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
EST: gi|149096163|gb|EE181859.2|EE181859
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
EST: gi|94477374|gb|EB706332.1|EB706332
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
EST: gi|71428852|gb|DR809902.1|DR809902
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
EST: gi|149075128|gb|EE163621.2|EE163621
EST:     TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAG                         GTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT
genomic: TGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaaca ... ctgcttttagGTCACTTCTGTCTCTTGGAAGGAAAATGAACTCAACATGGTTGATACACCT