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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCCAGTTTTTAAATGGCGACGGCGATGATGACTATGCGACGCGCGGCGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCACgtacgcccccctcacctcattaacccacccttctcttcgccgcttcatactacacccctctgccctcgcactccggcgcgtcactgtgcggtgccttcgtccgctttgttgggtgcggttttgatataatttgggtctgcag

Basic information

species Zea mays
transcript GRMZM2G128114_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 1
CCCATCCAGTTTTTAAATGGCGACGGCGATGATGACTATGCGACGCGCGGCGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCACgtacgcccccctcacctcattaacccacccttctcttcgccgcttcatactacacccctctgccctcgcactccggcgcgtcactgtgcggtgccttcgtccgctttgttgggtgcggttttgatataatttgggtctgcag
                     | ||  |  |||| | |||||||||||||||||||||||||| || |||||||       ||||||||  |||                   ||||| |   ||  |      || ||||||  | ||||   ||||||||||| | | | ||  ||  |    ||   | ||    |   ||| ||    | | |||||    |                
---------------------GGCGATGGCGATGGCGATGCGACGCGCGGCGGCGCTCGGCGCGCGCCACATCCT------CGCCGCCTCGTCC-------------------ACCTCCTCCTCCGGCGTCCTCCTCCGCCGCCACgtactctccccctctgccccccccccccttcggatgtgggtttagggc----gcttgctgtgaattgggaggtttgtgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000518|gb|EE037700.2|EE037700
EST:     CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCAC                         ATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG
genomic: CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCACgtacgccccc ... gggtctgcagATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG
EST: gi|78107121|gb|DV525539.1|DV525539
EST:     CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCAC                         ATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG
genomic: CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCACgtacgccccc ... gggtctgcagATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG
EST: gi|149087724|gb|EE177069.2|EE177069
EST:     CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCAC                         ATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG
genomic: CGGCGCTCGGCGCCCGACACATCCCGCCCGCCGCCGCCTTCTCCCGCCACgtacgccccc ... gggtctgcagATGAGTGCGGACGCGAGCGCCGCGATGGAGAAGATCCGCGCCGCGGGTCTG