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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGGGACACAGGCCAGATGGTGCTTCTGCGCGTTTGCCGTCACTTCGGCCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcctcctgctccccagtccttcgcatgtctgaagcccccaacctcattcctactccatctcctccccctcctttgcccgtcccccttcttcgcactcacttttttctctgctctttccag

Basic information

species Zea mays
transcript GRMZM2G128080_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626347|gb|AW257879.1|AW257879
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCTCAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|149042519|gb|EE047203.2|EE047203
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|101382451|gb|EB813281.1|EB813281
EST:     CGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|148938451|gb|EC882769.2|EC882769
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211362118|gb|FL332260.1|FL332260
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211185838|gb|FL326885.1|FL326885
EST:     GCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: GCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211134103|gb|FL315808.1|FL315808
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211314481|gb|FL348235.1|FL348235
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211477295|gb|FL319648.1|FL319648
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|211439800|gb|FL306622.1|FL306622
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG
EST: gi|15499422|gb|BI595935.1|BI595935
EST:     CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCG                         CTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCTCAGACG
genomic: CCACCTGCGCTTCGCCTCCTTCCTCTCAATGGCGGCGCCCCAGCAATCCGgtaaaatcct ... ctctttccagCTCCCCTGTCCGGGTCGGCGCCCAAGAGGCTCAGGGCGATGGCCACAGACG