ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat...

Basic information

species	Zea mays
transcript	GRMZM2G127591_T01
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 2

GGCGCCGGC--CGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgttt--acccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat
  | |||||   || ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    |    |  | | | |  |  ||||   || || | |    |       |||   |||| |   ||   ||   || | |    | ||||    || 
--CACCGGCGGTGGGCTGGGCAACCTGCGCGCGCTGCTGGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtccagatttcctctctctccctggatccctccccttccttcctttctctctccgattcaagattccattctcccct--cttcaatggatatcctgccaaac

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G42900.2 (Glycine max), 5'ss of exon 1

-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgct----acttttctcct-ttggaat
   ||    || |   | ||    |  |  |  |  |  ||||||| |||||||||| |||||| ||||| ||||||||| | |||||||||||||| ||||||  || ||  ||| | ||  ||||  |||| || |||     |  | |        |   ||||||  |   | | | ||    | |||| | || ||    |
CTTCGTTTTCCAGTG-GAGCGTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGgtt--cctgc--tatctcctt-cttcttcatctattttcaatttccaaacactcaccaattcgcttcttgtcttctgattctcgagattttttttctgtttacgt

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 1

-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat
 |      |||     | ||    |  |  |  |  | || || || || |||||||  ||||| ||||| ||||| ||||| ||||||||||||||||||||||  |    |||| |  |  |       |     |       |  |  |   | |    |  | ||||   |  | |  | |     |||||   |||
GGTTATTTGCCAATG-GAGCGTGTTTAGATCTCTCTTGGCAATACTTCAATGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgtttctctttgttatttctttacccaattcttataataattattcacacttttttatggtttcttcctcccctcttgtttgttccaaattccttcataat

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G11850.1 (Glycine max), 5'ss of exon 1

-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat-------
   ||    || |   | ||  | |  |  |  |  |  ||||||| ||||||||||  ||||| ||||||||||||||| | |||||||||||||||||||||  || |  || | ||    |||| || |||  || |  |      | |  || ||  |    || ||    || ||  |  ||||||  || |  |        
CTTCGTTTTCCAGTG-GAGCGTCATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCGTTCAATGTCACCGTCATCATCGTCAACAAGTGGATCTTCCAGgtt--cctgttttctctttctccttctcc-tcctcctccttctat---tttcaatttcgaaataatcaccaattcgccttttg-ttttctaattcgcgagatttgtt

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 1

-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat-
 |      ||| |   | ||    |  |  |  |  | || ||||| ||||||||||  ||||| ||||| ||||| ||||| |||||||||||||||||||||| | | |  | | |  |   |||   | |||  |   |       | |     | |    |   |  |     ||| ||        ||||   ||| 
GGTTATTTGCCAGTG-GAGCGTGTTTAGATCTCTCTTGGCTATCCTTCAGTGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgttt-ctctctctctctcgttatttctttacccaattcttgttataattataataattattcacactttttttattgcttctttcaaatcccttcacaatt

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1

-----GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatc-ttccgccgcggatctggat-gtcagatgcttctcctgcccggctgctacttttctcctttggaat
     |||| |    | |         | |  | | ||  |||  || || || |||||||| || ||||| || || |||||||||||||| |||||||| ||||||||     |   | |  ||  ||   |||  |    |  |||     | ||  |  || ||| || |   ||       |   |||| ||  |||| |  
TCTGTGGCGTCAATGGACT---ATGTTCAGATCTCTGTTATCG--ATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaa----aaagtctcttacttttatcattaaagacttagcctttcgtttgttttatctgat-ctgcgtttgaaatttggtacctttccttgtttgcag-

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G77610.1 (Arabidopsis thaliana), 5'ss of exon 1

GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgttt------acccgcattatattctagcttc-cccatccatcttc----cgccgcggatctggatgtcagat--gcttctcctgcccggctgctacttttctcctttggaat----------------------------------------
      ||  |      | |   |  |  |  |  | || || || ||||||||||| ||||| || |||||||||||||||||||| |||||||| |||||||      | ||  |  || ||   | ||  |  |    | ||     | |    ||||||       |||  | |  | |||    |    |   ||||  ||||  |                                          
AATCATGGAGGAAGGAAGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACAAATGGATCTTTCAGgtttcttcttaaccctagaatttttaggttttacttaattgtatttaatacccttttgatctgatctattgatctgatgttgctgatttggaatttggtttcagctttatagattggtgataaagttttgatttttttttgttgttgttgcag

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1

-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctc-ctgcccggctgctacttt--tctcctttggaat---
        ||| |   | || |  |  |  |  |||| |||||||| || |||||||| ||||| |||||||| || |||||||||||||||||||| ||||||| |   |  |   ||  || ||| | |  |  |  |     ||| | |   ||||  |||  | ||  | ||    |  |  |||  |||  ||  | ||   
TCTTCTTTGCCAGTG-GAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc--tgcttttcagattctcaaatc-ccccctctttcggcttt---tgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S60_175V6.3 (Physcomitrella patens), 5'ss of exon 3

GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatct---ggatgtcagatgcttctcctgcccggctgctacttttctcc-tttggaat
    ||||  ||| |       || || |  ||  | || ||  | ||||||||| | ||||||||    ||||||||||||||||||||||| |||||||||       ||| |||||| |   ||       | ||| |  ||  || |   | |  |       |     | |  | | |   ||||  |    | |||| 
TTTACCGGTTGGCATCACTCAACTCCGAGGAGTTATTGCAATTTTGCAGTGGTGGAGTTTCAACGTACTGGTCATCATCATGAACAAGTGGATTTTCCAGgttcgt---aattgtattcttgacacctatgtttttttctggagcaaatttcatgtacttttacgagtcagtttacttgaccgaccctttcatgagctcggaa-

upper sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S6_175V6.1 (Physcomitrella patens), 5'ss of exon 2

GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgc--tacttttctcctttggaat---
  ||||||  ||| |        | || |   |  | || ||||| ||||||||| | ||||| ||    ||||||||||||||||| ||||| |||||||||   |   | | | ||||| | | |  || | | ||         || | | ||||| |    ||   ||      | |  |   | | |||||    |    
ATCGCCGGTTGGCATCACTCAATTCCGAGGAATTGTGGCGATCCTGCAGTGGTGGAGTTTCAATGTGCTGGTCATCATCATGAACAAATGGATTTTCCAGgtt---cttgactgtgttcta-catacgtatgccttttattttatt-atataggtgtcacagatctcgaatgggtaatttccttgactatatccttcatgagctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|94475270|gb|EB704228.1|EB704228

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|31355051|gb|CD439408.1|CD439408

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211235623|gb|FL131359.1|FL131359

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211480496|gb|FK988274.1|FK988274

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|5555450|gb|AI881401.1|AI881401

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211480490|gb|FK988268.1|FK988268

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|22520681|gb|BU079492.1|BU079492

EST:     GTCATCATCATGAACAAG-GGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|148960623|gb|EE011250.2|EE011250

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|5268770|gb|AI770734.1|AI770734

EST:     GGTGGGGCTTCAACGTCACTGACATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|76909996|gb|DV163642.1|DV163642

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149083412|gb|EE172729.2|EE172729

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149099202|gb|EE185230.2|EE185230

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211480487|gb|FK988265.1|FK988265

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|21432236|gb|BQ547726.1|BQ547726

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149055768|gb|EE156476.2|EE156476

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149073036|gb|EE161303.2|EE161303

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211335327|gb|FK988239.1|FK988239

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|76016593|gb|DT943763.1|DT943763

EST:     AGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211335330|gb|FK988242.1|FK988242

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149099464|gb|EE185504.2|EE185504

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211477609|gb|FK988250.1|FK988250

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149107727|gb|EE189601.2|EE189601

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|31353677|gb|CD438034.1|CD438034

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|50328831|gb|CO523957.1|CO523957

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211480493|gb|FK988271.1|FK988271

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|149027779|gb|EE286079.2|EE286079

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|211480491|gb|FK988269.1|FK988269

EST:     GGTGGGGCTTCAACGTCACTGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

EST: gi|76289587|gb|DV029155.1|DV029155

EST:     GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAG                         AAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC
genomic: GGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 282

GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgc ... ttctctgcagAAACTGGATTTCAAGTTCCCTCTCACCGTGTCCTGCGTCCACTTCATCTGCTCTTCCATTGGAGCTTACATTGCAATCCATGTCCTCAAGGCGAAACCCC

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 268

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 240

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 191

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcccg