1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGGCAGGGGATCCGACCCGTCCCGCGCATCAACCACGCCTCCGTCCTCCGCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgcacctgtcccccagcttgattggggttgtgttggtgaggaaggctaattctggaggttggttggttgctccgcag
species | Zea mays |
transcript | GRMZM2G127453_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|31909649|gb|CD651024.1|CD651024
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211042955|gb|FK963033.1|FK963033
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211042961|gb|FK963039.1|FK963039
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211042956|gb|FK963034.1|FK963034
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211045917|gb|FK963045.1|FK963045
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211167601|gb|FL258650.1|FL258650
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211245830|gb|FL313150.1|FL313150
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|31353639|gb|CD437996.1|CD437996
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211042950|gb|FK963028.1|FK963028
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211167597|gb|FL258646.1|FL258646
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|78180798|gb|DV551171.1|DV551171
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|8665358|gb|BE186174.1|BE186174
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211167599|gb|FL258648.1|FL258648
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211045919|gb|FK963047.1|FK963047
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATCAAC CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|8401369|gb|BE057003.1|BE057003
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: CCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|5525193|gb|AI861191.1|AI861191
genomic: CCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211042953|gb|FK963031.1|FK963031
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGNCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|88755570|gb|DY539711.1|DY539711
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211115674|gb|FL110115.1|FL110115
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|31909179|gb|CD650789.1|CD650789
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211167596|gb|FL258645.1|FL258645
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCAEST: gi|211045915|gb|FK963043.1|FK963043
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGARGCAEST: gi|211115672|gb|FL110113.1|FL110113
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAEST: gi|31360970|gb|CD445327.1|CD445327
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGA
EST: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAG CATCCGGATCCGATCGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
genomic: GCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgc ... tgctccgcagCATCCGGATCCGATTGGCGAGGGGCTGGCTATGGAGGCGTTCGCGGAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGCAGGGGATCCGACCCGTCCCGCGCATCAACCACGCCTCCGTCCTCCGCGTTTCCACGCAGGAAGACTCCGCCGCCTACGCCCTCGCCATCATGAAGgtacgtacgcacctgtcccccagcttgattggggttgtgttggtgaggaaggctaattctggaggttggttggttgctccgcag
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