Sequence
atgc intronic sequence ATGC exonic sequenceGCCGAATTTCGTGTACAGGGGCCGCCTCGAGCCCAGCCGCCGCGCGATCGCCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCGgtacgcctccccccccctcccccccgtaggccgtagcagagcaggggagggcagggcagcctcgcggttcgactgtcgcccccctccccactgattcgctgctctgatggctttgcttcttccttcgcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 1
GCCGAATTTCGTGTACAGGGGCCGCCTCGAGCCCAGCCGCCGCGCGATCGCCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCGgtacgcctccccccccctcccccccgtaggccgtagcagagcaggggagggcagggcagcctcgcggttcgactg-tcgcccccctccccactgattcgctgctctgatggctttgcttcttccttcgcttgcag
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CCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGgtacgccccgattcgggaagagcttgttgtgcctgg------agaattcgtctttgctgtcat-cagtccgatagattaaggttatttgctttggttcgcag---------------------------------
upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 1
---GCCGAATTTCGTGTACAGGGGCCGCCTCGAGCCCAGCCGCCGCGCGATCGCCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCGgtacgcctccccccccctcccccccgtaggccgtagcagagcaggggagggcagggcagcctcgcggttcgactgtcgcccccctccccactgattcgctgctctgatggctttgcttcttccttcgcttgcag
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GGCCCCCAATATCGTCTACAAGGGTCGCCTCCAG---AACCGTCGGTGGATCGCCGTGAAGAAATTTACGAAGATGGCGTGGCCGGACCCGAAGCAGTTCGCTgtaactctcttttgtgtgctctcgttttgttcttcttttgatttctgtgtgtgggtgtgtttaattttgtgggttttgctgtttttggaagtgactttct----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149009662|gb|EE041601.2|EE041601EST: CCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCG GAGGAGGCCAAGGGGGTCGGGAAGCTGCGCCACCGCCGCCTGGCCAACCTG
genomic: CCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCGgtacgcctcc ... tcgcttgcagGAGGAGGCCAAGGGGGTCGGGAAGCTGCGCCACCGCCGCCTGGCCAACCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGAATTTCGTGTACAGGGGCCGCCTCGAGCCCAGCCGCCGCGCGATCGCCGTCAAGAAGTTCGCCAAGATGGCGTGGCCCGACCCCAAGCAGTTCGCGgtacgcctccccccccctcccccccgtaggccgtagcagagcaggggagggcagggcagcctcgcggttcgactgtcgcccccctccccactgattcgctgctctgatggctttgcttcttccttcgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG