Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTGCCAAGGCTAGCCCCCTCCTCCTCTTCTTCCTCTTCTTCTTTTCGCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgtttcatggcgatgaatggtcgtcatggcgcag

Basic information

species Zea mays
transcript GRMZM2G126900_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211530471|gb|FL294711.1|FL294711
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|45847627|gb|CN071570.1|CN071570
EST:     GCGGCGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|32919577|gb|CF024389.1|CF024389
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530470|gb|FL294710.1|FL294710
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGAAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAS-TGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|84351326|gb|DW245731.1|DW245731
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|32862853|gb|CF002535.1|CF002535
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|14529280|gb|BI096413.1|BI096413
EST:     TCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: TCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15353074|gb|BI502685.1|BI502685
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15427110|gb|BI542932.1|BI542932
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15079947|gb|BI388888.1|BI388888
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGACCAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|60341529|gb|DN208502.1|DN208502
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530473|gb|FL294713.1|FL294713
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGASSTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533471|gb|FL294719.1|FL294719
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148958996|gb|EE010519.2|EE010519
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|14569307|gb|BI097630.1|BI097630
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211414693|gb|FL109921.1|FL109921
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTMCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTTTGCCAAGGCTAGCCCCCTCCTCCTCTTCTTCCTCTTCTTCTTTTCGCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgtttcatggcgatgaatggtcgtcatggcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC