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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTGCCAAGGCTAGCCCCCTCCTCCTCTTCTTCCTCTTCTTCTTTTCGCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgtttcatggcgatgaatggtcgtcatggcgcag

Basic information

species Zea mays
transcript GRMZM2G126900_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211533467|gb|FL294715.1|FL294715
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533476|gb|FL294724.1|FL294724
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530464|gb|FL294704.1|FL294704
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533468|gb|FL294716.1|FL294716
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|67014192|gb|CO442941.1|CO442941
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78084506|gb|DV512899.1|DV512899
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|88752150|gb|DY536291.1|DY536291
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530470|gb|FL294710.1|FL294710
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGAAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAS-TGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|76289997|gb|DV029565.1|DV029565
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|37424596|gb|CF650031.1|CF650031
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78086722|gb|DV515115.1|DV515115
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530473|gb|FL294713.1|FL294713
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGASSTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533475|gb|FL294723.1|FL294723
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGASCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148939596|gb|EC884223.2|EC884223
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|149042044|gb|EE047019.2|EE047019
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148960892|gb|EE011574.2|EE011574
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211414693|gb|FL109921.1|FL109921
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTMCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|20300192|gb|BQ163135.1|BQ163135
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530465|gb|FL294705.1|FL294705
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGTAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGG-AAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTG
EST: gi|211530467|gb|FL294707.1|FL294707
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533473|gb|FL294721.1|FL294721
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530463|gb|FL294703.1|FL294703
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530472|gb|FL294712.1|FL294712
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|93284184|gb|EB676448.1|EB676448
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78112469|gb|DV530863.1|DV530863
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|60342265|gb|DN209238.1|DN209238
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78076468|gb|DV504902.1|DV504902
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148941676|gb|EC886623.2|EC886623
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533477|gb|FL294725.1|FL294725
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533471|gb|FL294719.1|FL294719
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGA-CTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15005365|gb|BI325432.1|BI325432
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|101386278|gb|EB815159.1|EB815159
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|67041064|gb|CO467319.1|CO467319
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|149010866|gb|EE042255.2|EE042255
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78088525|gb|DV516918.1|DV516918
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|149100878|gb|EE186973.2|EE186973
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|71325953|gb|DR799659.1|DR799659
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|93281928|gb|EB674192.1|EB674192
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148962202|gb|EE013017.2|EE013017
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530461|gb|FL294701.1|FL294701
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530469|gb|FL294709.1|FL294709
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|78114314|gb|DV532703.1|DV532703
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211530474|gb|FL294714.1|FL294714
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533478|gb|FL294726.1|FL294726
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533469|gb|FL294717.1|FL294717
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGAAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|148942392|gb|EC887411.2|EC887411
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533474|gb|FL294722.1|FL294722
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAS-TGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|211533470|gb|FL294718.1|FL294718
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGCGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
EST: gi|15177491|gb|BI398430.1|BI398430
EST:     GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCG                         ATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG
genomic: GCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagctttt ... catggcgcagATGCGGTGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTTTGCCAAGGCTAGCCCCCTCCTCCTCTTCTTCCTCTTCTTCTTTTCGCGACGATCAGAGAAGAAGATGACGATCACCATTGAACAGCCCCAGCTCGgtgagcttttttgtgttttctttcttcgctcgtgttcttctccctcccctgtttgcctattgggaagtttcgtttcatggcgatgaatggtcgtcatggcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC