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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGGTGCTCGACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagcctactgatttgctacggtgggttcttggggatccgtacgtcgacgccaaaactcaaaggccaggcgcaagcagagaagattggggcttat...

Basic information

species Zea mays
transcript GRMZM2G126900_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 2
TGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGGTGCTCGACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagcctactgatttgctacggtgggttcttggggatccgtacgtcgacgccaaaactcaaaggccaggcgcaagcagagaagattggggcttat----
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GGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGGCGGAGCTCGTGCTCGACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgt----cagctacatattcctgcataggaaaaaaacagagcatcatgcaaaaacagagcaaaacagagtgtcaactatggttaaaaatattatcccctcagaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057958|gb|BM736625.1|BM736625
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAG                         GGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG
genomic: GACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagc ... cttggtgcagGGACTACGACGCGGAGTCGGAGCGGAAGCAGACGGTAGAGGAGTTCTACCG