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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCGGCTTCCTTCTCTACCCTTCCCTCGCGCCGCCGCCACCGCAAGAGTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctctctcgtccttgctctagcgcttgttgcatcttcgctgcgctgcagccatggatttggcctcgcccttacgaacccctgacgtgcggcggctcttgttttgtggttccag

Basic information

species Zea mays
transcript GRMZM2G126594_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32863531|gb|CF003213.1|CF003213
EST:     GTATCTCAACTCTGCCCCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211490990|gb|FL061102.1|FL061102
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|67034878|gb|CO463411.1|CO463411
EST:     AGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: AGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|14701464|gb|BI233882.1|BI233882
EST:     ATCTCAACTCCGCCTCGAGACCTTCCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: ATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|13149648|gb|BG319970.1|BG319970
EST:     GTATCTCAACTCCGCCTCGAGACCTTCCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|76011925|gb|DT939095.1|DT939095
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|67025568|gb|CO454317.1|CO454317
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|29947113|gb|CB816488.1|CB816488
EST:     TCGCTGGTCTCAGCCATG                         G-GAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: TCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|33770648|gb|CF272942.1|CF272942
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211496762|gb|FL061129.1|FL061129
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|50333911|gb|CO529037.1|CO529037
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211490997|gb|FL061109.1|FL061109
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211490989|gb|FL061101.1|FL061101
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211493873|gb|FL061115.1|FL061115
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|33102839|gb|CF062799.1|CF062799
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211496759|gb|FL061126.1|FL061126
EST:     GTATCTCAACTCCGCCTCGAGACCTTCCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|108824025|gb|EC278033.1|EC278033
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|32910969|gb|CF015781.1|CF015781
EST:     GTATCTCAACTCTGCCCCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|31664276|gb|CD573001.1|CD573001
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|30088089|gb|CB886294.1|CB886294
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCG-CCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211496760|gb|FL061127.1|FL061127
EST:     GTATCTCAACTCCGCCTCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|4730495|gb|AI649661.1|AI649661
EST:     TCGCTGGTCTCAGCCATG                         GNGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: TCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|213172413|gb|FM189295.1|FM189295
EST:     GTATCTCAACTCTGCCCCGAGACCT-CCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|31358169|gb|CD442526.1|CD442526
EST:     CGAGACCTTCCCCCCTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT
genomic: CGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|71434744|gb|DR815794.1|DR815794
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|50329073|gb|CO524199.1|CO524199
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|211199565|gb|FL177986.1|FL177986
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
EST: gi|76912497|gb|DV164761.1|DV164761
EST:     GTATCTCAACTCCGCCTCGAGACCTNNNNNNNTCGCTGGTCTCAGCCATG                         GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT
genomic: GTATCTCAACTCCGCCTCGAGACCTCCCCCCCTCGCTGGTCTCAGCCATGgtgagatctc ... gtggttccagGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT