Sequence
atgc intronic sequence ATGC exonic sequenceGCCCGATGTGCTGGACTCCGCGCTCCTACGACCAGGGAGATTTGATAGGCAGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtgatgaactcctgccactactagcctgtaaatttgtgcttagctagcagttgatatgcttctgaactactagtagtattgaggaacttatttata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126361_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g51029.1 (Oryza sativa), 5'ss of exon 1
GCCCGATGTGCTGGACTCCGCGCTCCTACGACCAGGGAGATTTGATAGGCAGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtgatgaactcctgccactactagcctgtaaatttgtgcttagctagcagttgatatgcttctgaactactagtagt--attgaggaacttatttata--
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GCCTGATGTGCTCGACGCGGCTCTTCTTCGCCCTGGGAGGTTCGATCGGCAGGTCACCGTAGACAGGCCGGATGTCGCCGGGCGTGTCAAGATTCTTGAGgtgagcacttgcctattgtt-tagctagcttgtgatttcctat---gcttttagtagatattgttctgaatttcaatgaaccaattcacaaatttgcttagttc
upper sequence: GRMZM2G126361_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S10_192V6.2 (Physcomitrella patens), 5'ss of exon 1
GCCCGATGTGCTGGACTCCGCGCTCCTACGACCAGGGAGATTTGATAGGCAGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtga--tgaactcctgccact---actagcc----tgtaaatttgtgcttagctagcagt-tgatatgcttctgaactactagtagtattgaggaacttatttata----------------------------------------
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ACCCGATGTGCTCGACTCTGCTCTTCTCCGACCCGGACGATTTGACAGGCAGGTCACCGTCGACAGGCCAGATGTTCAAGGGCGTGTTAGGATTCTTCAGgtacttcccttggatttttctcagttgtactggtcctcttaccaaattttgcttgcctttcgtcacgatgcatggttgaccttaaagc-gtgttgaaaaccatttttgtgttcaatagtaatccagattgtctttgctcttcccctttag
upper sequence: GRMZM2G126361_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S44_78V6.1 (Physcomitrella patens), 5'ss of exon 2
GCCCGATGTGCTGGACTCCGCGCTCCTACGACCAGGGAGATTTGATAGGCAGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtga--tgaactcctgccact-------actagcctgtaaatttgtgcttagctagcagttgatatgcttctgaactactagtagtattgaggaacttatttata-----------------------------------------------------------------------
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ACCCGATGTCCTCGACTCCGCTCTTCTCCGACCTGGACGATTCGACAGGCAGGTTACCGTTGACAGGCCAGACGTTCAAGGTCGTGTCAGAATTCTTCAGgtacatgccttgagttctttctacttcaatacaccatcctatctgcagcctcttttctcaacttgattatgcttctatcttatcgaatgctctcttgtcttaatccttacgaatttgcatttatggctttcttcatgagttcagcagaaattgtatactgatgaagaagttggtttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93283832|gb|EB676096.1|EB676096EST: AGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAG GTCCACTCCCGAGGAAAGGCTTTGGCGAAAGATGTTGATTTTGATAAAATT
genomic: AGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtgatg ... tatcaaatagGTCCACTCCCGAGGAAAGGCTTTGGCGAAAGATGTTGATTTTGATAAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCCGATGTGCTGGACTCCGCGCTCCTACGACCAGGGAGATTTGATAGGCAGGTCACCGTTGACAGGCCAGATGTTGCCGGACGCGTCAAGATTCTTGAGgtcagtgatgaactcctgccactactagcctgtaaatttgtgcttagctagcagttgatatgcttctgaactactagtagtattgaggaacttatttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG