1 5' 3' | 2 5' 3' | 3 5' 3' |
AGACAAGAAGGCGGTGGTGATCAACAGCTACTGGGGGATCGAGCAAAACAACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccctgccttctcgggctcgctttgatcattgtgcagtttatctgccctaatttgcggttcgtctcggcggtggatcgattcgcgctagttgtgagtgattaatctgttgtttttgttgaag
species | Zea mays |
transcript | GRMZM2G125669_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472274|gb|FL205292.1|FL205292
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGAC-TCACCAGACACCATEST: gi|148947765|gb|EC893251.2|EC893251
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472275|gb|FL205293.1|FL205293
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: GTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472278|gb|FL205296.1|FL205296
genomic: GTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGAEST: gi|78114087|gb|DV532476.1|DV532476
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGA
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472271|gb|FL205289.1|FL205289
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|148960977|gb|EE011674.2|EE011674
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|149015792|gb|EE045489.2|EE045489
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|89250644|gb|DY622430.1|DY622430
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|71439210|gb|DR820260.1|DR820260
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472277|gb|FL205295.1|FL205295
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCYTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|148930596|gb|EE285266.2|EE285266
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCATEST: gi|211472270|gb|FL205288.1|FL205288
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACEST: gi|211472276|gb|FL205294.1|FL205294
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACAC
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTEST: gi|211472268|gb|FL205286.1|FL205286
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACAEST: gi|13150527|gb|BG320849.1|BG320849
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACA
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACYTCACCAGACACCATEST: gi|211472273|gb|FL205291.1|FL205291
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTEST: gi|211472269|gb|FL205287.1|FL205287
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGT
EST: CAAGCTAGCGCKGTGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGEST: gi|148949605|gb|EC895076.2|EC895076
genomic: CAAGCTAGCGCGG-GACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCG
EST: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGG CCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
genomic: ACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccc ... tttgttgaagCCATGGGAGACGTACACGGCGGACACGTCCATTGACCTCACCAGACACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAAGAAGGCGGTGGTGATCAACAGCTACTGGGGGATCGAGCAAAACAACAAGCTAGCGCGGGACGACGGCACCGAGTGGAAGTGGACTTGCTTTAGGgtacgcgccctgccttctcgggctcgctttgatcattgtgcagtttatctgccctaatttgcggttcgtctcggcggtggatcgattcgcgctagttgtgagtgattaatctgttgtttttgttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA