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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGCATTCCGCCGCTGCAGAGGTAAGCAACAGGACAAGGCCTCCCCTGAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtagtggttgaatctattttacattgtggctggcggggttggctgggtaccggggtgggtggcggaaatgcagcgcctgtcaatcttgtcaact...

Basic information

species Zea mays
transcript GRMZM2G124965_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083327|gb|EE172619.2|EE172619
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|148986560|gb|EE030320.2|EE030320
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|211322042|gb|FL425804.1|FL425804
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|71769408|gb|DR967345.1|DR967345
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|149111705|gb|EE190850.2|EE190850
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|149106183|gb|EE291871.2|EE291871
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|91055562|gb|EB165980.1|EB165980
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|71437018|gb|DR818068.1|DR818068
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|78083626|gb|DV512019.1|DV512019
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|149009510|gb|EE041499.2|EE041499
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|148954197|gb|EC899605.2|EC899605
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|91050700|gb|EB161118.1|EB161118
EST:     GAGGATACTGCTGCTGTGGCTCGAGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGGGAACATGATACTGTCACTGAGAAGGACCTAAAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|94472323|gb|EB701281.1|EB701281
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|211171635|gb|FL426200.1|FL426200
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCAC
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCAC
EST: gi|31354728|gb|CD439085.1|CD439085
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|211452653|gb|FL419421.1|FL419421
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAAGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAAAC
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAA-C
EST: gi|211256230|gb|FL369156.1|FL369156
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAA
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAA
EST: gi|93017144|gb|EB642664.1|EB642664
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|91054396|gb|EB164814.1|EB164814
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|76015844|gb|DT943014.1|DT943014
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|86469996|gb|DY236366.1|DY236366
EST:     GAGGATACTGCTGCTGTGTCTCGGGACGGCGGAGGTTGCGCCTATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAAAAGGACCTAAAACT
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGACCTAGAACT
EST: gi|211154695|gb|FL375831.1|FL375831
EST:     GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAG                         GACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGAC
genomic: GAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtag ... tgatcggcagGACAAATTTTGAGGGTGAACATGATACTGTCACTGAGAAGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCCGCATTCCGCCGCTGCAGAGGTAAGCAACAGGACAAGGCCTCCCCTGAGGATACTGCTGCTGTGGCTCGGGACGGCGGAGGTTGCGCCGATGGCAGgtgagcgtagtggttgaatctattttacattgtggctggcggggttggctgggtaccggggtgggtggcggaaatgcagcgcctgtcaatcttgtcaact

- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT