1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAACCGGCAGGAGGGAAGGAAAGGTCCATGGCGGGGAGATCGACGTACGACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCGgtaatcctgcctgccctgcccagcccaggcccagctcgcgccggcgatgagctccgtccggctcttcctttccccctgctttgattgattgcttctgcgt...
species | Zea mays |
transcript | GRMZM2G124918_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCG GACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGCEST: gi|211468481|gb|FL364661.1|FL364661
genomic: ACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCGgtaatcctgc ... tattctccagGACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGC
EST: ACAACCCCTTCGAGGAGGGCGCCGCCGCGGCCGAGGTCAACCCTTTCGCG GACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGCEST: gi|78111675|gb|DV530072.1|DV530072
genomic: ACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCGgtaatcctgc ... tattctccagGACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGC
EST: ACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCG GACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGC
genomic: ACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCGgtaatcctgc ... tattctccagGACCAAGCTAAACGAGGAGGACCGACGGCTCAGTCCAGCTATTCTGGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACCGGCAGGAGGGAAGGAAAGGTCCATGGCGGGGAGATCGACGTACGACAACCCCTTCGAGGAGGGCGCAGCCGCGGCCGAGGTCAACCCTTTCGCGgtaatcctgcctgccctgcccagcccaggcccagctcgcgccggcgatgagctccgtccggctcttcctttccccctgctttgattgattgcttctgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctgc