1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCACGGGTGGGACCGTCTCCTTCCAGCAGCCAGCCCCTGGGGCTGGGGGCACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtcgatggaattagggtttgcgttccgcggattttggtgatttgtatgtactctgtcgattggtgcggaaatctagtccgtcgattcgcatgg...
species | Zea mays |
transcript | GRMZM2G124502_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAG TTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGCEST: gi|78111193|gb|DV529590.1|DV529590
genomic: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtc ... tttcttctagTTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGC
EST: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAG TTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGCEST: gi|71422220|gb|DR805652.1|DR805652
genomic: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtc ... tttcttctagTTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGC
EST: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAG TTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGCEST: gi|71440370|gb|DR821420.1|DR821420
genomic: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtc ... tttcttctagTTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGC
EST: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAG TTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGC
genomic: ACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtc ... tttcttctagTTCTTCTAAGCGAAAAAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGGGTGGGACCGTCTCCTTCCAGCAGCCAGCCCCTGGGGCTGGGGGCACTGCTTCCCCCACCGCTGCACCGCAGGTCGCCGGCGACAACAAGGAAAGgtgagttgtcgatggaattagggtttgcgttccgcggattttggtgatttgtatgtactctgtcgattggtgcggaaatctagtccgtcgattcgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA