Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt...

Basic information

species Zea mays
transcript GRMZM2G124455_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 1
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcgg--ggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccc-cccatctcgtgtgatctgagtgcgagagggtt
|||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||  |||| || |||||| |||||||||||||||||||||| ||||||     | || |  |      |   ||    |  | ||         |||  |     ||  |||    |||| || | |||  | | |   | ||   
AACTACAACAAGGCCCTCGAGCAGCTCGACGCCGCCGTCGCCAAGGGCGACGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaagtcccgccccccttaccccttcctcgcatacggctttctttctttctttttcttcgtcctgttcatcgcgggcgatgcgggcggcggggg---

upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 1
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt--
|||| ||||||||| || ||||||||| | |  ||||||||||||   ||  ||||||| |||||  ||||||||||||||||||||||||||||||| |||  | |    |  | |      |   |||  |   ||||||   |    |   |    |  |  |   | |  |  |   ||    | |   ||   |   
AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccg-attccctttttctttttcttttttttttctttcgatttcgtctttcttttttttaatggcttactagatgata-aattacggcgactgaaaatcga

upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G14960.1 (Glycine max), 5'ss of exon 1
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt----
|||||||||||||| || ||||||||| | |  ||| ||||||||   ||  ||||||| |||||  ||||||||||||||||||||||||||||||| |||   |     |||| |          |||   |  || | |        |||  | | || |        |  |   |    ||||         | ||    
AACTACAACAAGGCCCTCGAGCAGCTCCAAGACGCCATCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgt---tcgattccctttttctttttcttttttcgattttgtttcttttttttaaag-gtttattagatgataaattacggcggctgaaaattgatcgattcgtg

upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0067g02990.t01 (Vitis vinifera), 5'ss of exon 1
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggctta----gtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt--
||||||||||| || || ||||||||| | |  ||| | |  ||||||||  | ||  | || ||| || | |||||||||||||||||||||||||| |||   |||    | |||      | | ||| |   |||||||     |  |||    ||| | | || |   |  || | ||| |   ||| |    | |  ||  
AACTACAACAAAGCCCTAGAGCAGCTCCATGAAGCCATGGAAAAGGGCGATTCATCTACGGTTGTCAAGTTGCAGGGCGCCATCAAGTTCAACGGCGGAGgtt--taattctcttgtttctctctagtttta---gttcgattttctgttttaatcggtgtggtgtttttatcaaattttgtg-gtggtgaatatttgggatttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12969984|gb|BG266756.1|BG266756
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71330409|gb|DR801958.1|DR801958
EST:     GGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: GGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29544424|gb|CB604804.1|CB604804
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|7216728|gb|AW562850.1|AW562850
EST:     CGCCTCCGCTGTCGNCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCAT
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCAT
EST: gi|149102601|gb|EE188241.2|EE188241
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71439541|gb|DR820591.1|DR820591
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71768769|gb|DR966706.1|DR966706
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|60351803|gb|DN218776.1|DN218776
EST:     CTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149107702|gb|EE189578.2|EE189578
EST:     CAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29545016|gb|CB605194.1|CB605194
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|74244470|gb|DT652384.1|DT652384
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|40337235|gb|CK371305.1|CK371305
EST:     AAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: AAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|67011046|gb|CO439795.1|CO439795
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71298564|gb|DR785257.1|DR785257
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148933163|gb|EC876803.2|EC876803
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|74233583|gb|DT641497.1|DT641497
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|67018883|gb|CO447632.1|CO447632
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71426926|gb|DR807976.1|DR807976
EST:     AGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATTTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: AGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71437068|gb|DR818118.1|DR818118
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|91056846|gb|EB167264.1|EB167264
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149021338|gb|EE045792.2|EE045792
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|9733426|gb|BE512283.1|BE512283
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|101384391|gb|EB814240.1|EB814240
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29544566|gb|CB604946.1|CB604946
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|211255956|gb|FL470284.1|FL470284
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29543885|gb|CB604265.1|CB604265
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71440078|gb|DR821128.1|DR821128
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|50336630|gb|CO531756.1|CO531756
EST:     TCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: TCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|50329149|gb|CO524275.1|CO524275
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|101389793|gb|EB816827.1|EB816827
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71298562|gb|DR785256.1|DR785256
EST:     CGCCTCCGCTGTTGTCCAGCTTCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|26557504|gb|CA829739.1|CA829739
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|50336612|gb|CO531738.1|CO531738
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|37395751|gb|CF635158.1|CF635158
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|50331196|gb|CO526322.1|CO526322
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29543442|gb|CB603838.1|CB603838
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29544474|gb|CB604854.1|CB604854
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|60351636|gb|DN218609.1|DN218609
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71447967|gb|DR829017.1|DR829017
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29544083|gb|CB604463.1|CB604463
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|40336945|gb|CK371015.1|CK371015
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148972354|gb|EE023268.2|EE023268
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71330410|gb|DR801959.1|DR801959
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|4776003|gb|AI665006.1|AI665006
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149095146|gb|EE180760.2|EE180760
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|211255955|gb|FL470283.1|FL470283
EST:     AGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: AGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148993134|gb|EE033733.2|EE033733
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|110934226|gb|EE154452.1|EE154452
EST:     CAAGTTCAACGGGGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148948500|gb|EC894019.2|EC894019
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|76014752|gb|DT941922.1|DT941922
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|101400004|gb|EB821849.1|EB821849
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71440079|gb|DR821129.1|DR821129
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|89248399|gb|DY620185.1|DY620185
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGGGGCG                         GTCATGTGAACCATTTCA-TCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATT-CAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148931241|gb|EC874027.2|EC874027
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29577041|gb|CB617153.1|CB617153
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|29544216|gb|CB604596.1|CB604596
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|78027681|gb|DV496068.1|DV496068
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|211509990|gb|FL212155.1|FL212155
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149040136|gb|EE046787.2|EE046787
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|31664230|gb|CD572955.1|CD572955
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|148964625|gb|EC905915.2|EC905915
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAGGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|31997580|gb|CD661666.1|CD661666
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|76292534|gb|DV032102.1|DV032102
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149107703|gb|EE189579.2|EE189579
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|28568998|gb|CB280873.1|CB280873
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|91056845|gb|EB167263.1|EB167263
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149008749|gb|EE040946.2|EE040946
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|71426927|gb|DR807977.1|DR807977
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|101399699|gb|EB821696.1|EB821696
EST:     CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
EST: gi|149040135|gb|EE046786.2|EE046786
EST:     GCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGGG                         GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC
genomic: GCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 242

AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 222

AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 134

AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 174

AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacg ... caattttcagGTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc