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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacactccttatcctgcttagaaattgtttggtttaataaacaactgtgccccttggttccgtgtaaggtatgcggggttaatcctagatccatg...

Basic information

species Zea mays
transcript GRMZM2G124365_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148996150|gb|EE035419.2|EE035419
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211128223|gb|FL382946.1|FL382946
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|71304463|gb|DR788345.1|DR788345
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842618|gb|CD982299.1|CD982299
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842597|gb|CD982278.1|CD982278
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842683|gb|CD982364.1|CD982364
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211042173|gb|FL385501.1|FL385501
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842669|gb|CD982350.1|CD982350
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|67040651|gb|CO466906.1|CO466906
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211323552|gb|FL394714.1|FL394714
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGMAAGTGACATATTGACATTGGATAGCATCAGAC
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCG-AAGTGACATATTGACATTGGATAGCATCAGAC
EST: gi|32842206|gb|CD981887.1|CD981887
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|89763811|gb|DY690849.1|DY690849
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211131047|gb|FL391845.1|FL391845
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842514|gb|CD982195.1|CD982195
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211326342|gb|FL425003.1|FL425003
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842415|gb|CD982096.1|CD982096
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842444|gb|CD982125.1|CD982125
EST:     GGAACAAGGGGCTCCGCGCGGCCAACAAGCTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: GGAACAAGGGGCTCCGCGCGGCCAACAA-CTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842790|gb|CD982471.1|CD982471
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842552|gb|CD982233.1|CD982233
EST:     AGGAACAAGGGGCTCCGCGCGGGCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842439|gb|CD982120.1|CD982120
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211236776|gb|FL420045.1|FL420045
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211222127|gb|FL422630.1|FL422630
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842376|gb|CD982057.1|CD982057
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842412|gb|CD982093.1|CD982093
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|37422138|gb|CF648774.1|CF648774
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|67041520|gb|CO467775.1|CO467775
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|149077332|gb|EE166011.2|EE166011
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842408|gb|CD982089.1|CD982089
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|148931381|gb|EC874300.2|EC874300
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|67040128|gb|CO466383.1|CO466383
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|32842587|gb|CD982268.1|CD982268
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211217423|gb|FL401820.1|FL401820
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
EST: gi|211035045|gb|FL415129.1|FL415129
EST:     AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAA                         GGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCGCGGCCAACAACTCCGCAACGCCCATAGCTAAgtacgaacac ... cttttattagGGTAGAGAGGGTTGATCGAAGTGACATATTGACATTGGATAGCATCAGACA