1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTACCGGCCCCGCCCATATGCCGGGCTGGGTGGCGCCGAGATCTTCGAGAAGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctcggagtgttgatcttaattagatccgtctcactcgctgctcgtctttgttatccgtgcgatgaaataagattagtgttccaaaaaggtggg...
species | Zea mays |
transcript | GRMZM2G124353_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|67034943|gb|CO463476.1|CO463476
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAAAAGCCG CTCAACATTGTGCAGGGGAAGATGCAGTACCTGTATGACGAGCATGGNGAAEST: gi|149042716|gb|EE047231.2|EE047231
genomic: AAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGG-AAA
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|148965746|gb|EE016621.2|EE016621
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|20811243|gb|BQ295721.1|BQ295721
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCTATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|148955020|gb|EC900523.2|EC900523
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|31910697|gb|CD651554.1|CD651554
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: GCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|5268428|gb|AI770392.1|AI770392
genomic: GCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|5398767|gb|AI812232.1|AI812232
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|31350579|gb|CD434936.1|CD434936
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|14208236|gb|BG841914.1|BG841914
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAGEST: gi|148929128|gb|EC874538.2|EC874538
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
EST: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCG CTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
genomic: AGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctc ... gtgttcacagCTCAACATTGTGGAGGGGAAGATGCAGTACCTGTATGACGAGCATGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCGGCCCCGCCCATATGCCGGGCTGGGTGGCGCCGAGATCTTCGAGAAGAGGAAGGCGGTGCTCGGCCCGTCTCTCTTCCATTACTACCAGAAGCCGgtataccctcggagtgttgatcttaattagatccgtctcactcgctgctcgtctttgttatccgtgcgatgaaataagattagtgttccaaaaaggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcactcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaagg