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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCGTGGCGCTTGTTTGTGCAGATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatatgcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta...

Basic information

species Zea mays
transcript GRMZM2G124091_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124091_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 2
GATTCGTGGCGCTTGTTTGTGCAGATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatatgcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta------
                         ||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||| |||||||||||   |||||    ||  || ||  |     |  ||   ||  ||      | |   |  | |  || |  |    | | || |     ||| | ||      
------------------------GTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGgtaaagtgcatcttcgttgcttg-ctaaac---tgcccgtgtaaggattccaacgaacgattgtcgacgtttaac--gtgtttgagctcatgcagtcatactgttt

upper sequence: GRMZM2G124091_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTCGTGGCGCTTGTTTGTGCAGATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatat-----gcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta
                         ||  | || ||||| || || ||||||||||| || |||||||| || || || || |||||||||||| ||||||||||     | |||    ||| | || | |      |  | |  |||  ||| | |||| ||  | ||     | |        |  ||   |  | ||     
------------------------GTACTTATCATGGGATGATTATTTCATGGCGATTGCATTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCAGgtaaattttgt-tgtttgtgatatttgaacaacatgagtatccaaacagttatatatgtgtaagctgctcaaaatgtattatgttcatgatactatatagt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211159709|gb|FL164261.1|FL164261
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAG