1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATCCTCCGTCAGACCCCAGAACCTCCCCGCCGCCGCTAACGGATCTGCCTCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaatgttctcccgccctcgttagcgatccttatgccagtccgctcgtcttgagtctcctgtgcagattcgtggcgcttgtttgtgcag
species | Zea mays |
transcript | GRMZM2G124091_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|89253024|gb|DY624810.1|DY624810
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477981|gb|FL231676.1|FL231676
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|101399938|gb|EB821816.1|EB821816
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477980|gb|FL231675.1|FL231675
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477983|gb|FL231678.1|FL231678
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGS ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211239068|gb|FL308505.1|FL308505
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGC-TTCCTTTCGGCTGAEST: gi|211359478|gb|FL332719.1|FL332719
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|149000975|gb|EE038215.2|EE038215
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477979|gb|FL231674.1|FL231674
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477985|gb|FL231680.1|FL231680
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211500675|gb|FL332351.1|FL332351
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211125807|gb|FL321198.1|FL321198
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGCGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAEST: gi|211477978|gb|FL231673.1|FL231673
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
EST: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGG ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
genomic: TCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaat ... gtttgtgcagATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCTCCGTCAGACCCCAGAACCTCCCCGCCGCCGCTAACGGATCTGCCTCCGAGCGCCCGCTGGCTCAGTCCCCCTTCGATCCTGTCAAGAGGGAAGGgttcgtcaatgttctcccgccctcgttagcgatccttatgccagtccgctcgtcttgagtctcctgtgcagattcgtggcgcttgtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG