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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACGTGCAGTACAACGTGTACGGAAACCTCCTGGAGGTCTCCGCCAAGTACGTCCCGCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgtgcgtacgtcgtcctccctcatcgatcgccttctcgtttgttcgttcgggcttcactactagtacgtaccggatcttttgtgcatgcatgcag

Basic information

species Zea mays
transcript GRMZM2G123886_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123886_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 1
GCTACGTGCAGTACAACGTGTACGGAAACCTCCTGGAGGTCTCCGCCAAGTACGTCCCGCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgt--gcgtacgtcgtcctccctcatcgatcgccttctcgtt-tgttcgttcgggcttc--actactagt-acgtaccggatcttttgtg--catgcatgcag
| |||||||||||||||||||| || |||||  | ||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |  |  | | | | |     |  ||| || |||  || || |  |||   ||    | |  || |  | |     | ||  ||||  | || || |  
GGTACGTGCAGTACAACGTGTATGGTAACCTGTTCGAGGTTTCGTCCAAGTACGTCCCTCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgtcagtttcagactttcacttcagttcatctccatctaattctgattcttcctcctctggattgttaattgctttgtcaacctcgtgtgatcgtgaattc--

upper sequence: GRMZM2G123886_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
GCTACGTGCAGTACAACGTGTACGGAAACCTCCTGGAGGTCTCCGCCAAGTACGTCCCGCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgtgcgtacgtcgtcctccctcatcgatcgccttctcgtttgttcgttcgggcttcactactagtacgtaccggatcttttgtgcatgcatgcag
| |||||||| |||||||||||||||||| |  | ||||||||| ||||||| ||||| ||||| ||||| |||||  | ||||| | ||||||| | ||||   ||      | |    | |      |  |||  |   |   |     | |||||  | || | | |    |  |  |             
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgttttcccttttcttctctcttatacttcaatatcctcctcactgtttgttctttctcacttctcag-------------